Ss1.1-ruio30_p21.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTTAGCACGCCGGCTATCCTCATCCTCCTCTGCTGGATCAGCTATGGCGGCAGTGAAGA CACTGAACCCCAAGGCCGAGGTGGCCCGAGCCCAGGCGGCGCTCGCGGTCAACATCAGCG CGGCCCGGGGGCTGCAAGACGTGTTGAGGACCAACCTGGGGCCTAAGGGCACCATGAAGA TGCTTGTTTCTGGTGCTGGAGACATCAAGCTTACTAAAGATGGCAATGTGCTGCTTCATG AAATGCAAATTCAGCACCCAACAGCTTCCTTAATAGCCAAAGTAGCAACAGCCCAGGATG ACATAACTGGTGATGGTACCACTTCCAATGTCCTGATCATTGGAGAGCTCCTGAAGCAGG CGGACCTCTACATTTCTGAAGGTCTTCATCCCAGAATAATAACAGAAGGATTTGAAGCTG CAAAGGAAAAGGCACTTCAGTTTTTGGAACAAGTTAAAGTAAGCAAAGAGATGGACAGGG AAACGCTTATAGACGTGGCCAGAACATCTCTACGTACTAAAGTTCATGCTGAACTTGCTG ATGTCTTAACAGAGGCTGTAGTGGACTCTGTTTTGGCCATTAAAAAACAAGATGAACCTA TTGACCTCTTCATGGTTGAGATCATGGAGATGAAACATAAATCTGAAACCGATACAAGCT TGATCAGGGGTCTTGTTTTGGACCATGGGGCACGGCATCCGGACATGAAAAAGAGAGTAG AAGATGCATACATCCTCACGTGCAATGTGTCATTGGAATATGAAAAAACAGAAGTGAATT CTGGCTTTTTTTATAAGAGTGCAGAAGAGAGAGAGAAACTAGTAAGAGCTGAAAGAAAAT TCATTGAAGATAGAGTTAAGAAAATAGTAGAGTTGAAGAAGAAAGTCTGTGGTGATTCAG ATAAAGGATTTGTTGTTATTAATCAAAAGGGAATTGACCCCTTTTCCTTAGATGCTCTTG CAAAAGAAGGCATAGTAGCTCTACGTAGAGCTAAGAGGAGAAACATGGAAAGGCTGACTC TTGCTTGTGGTGGGGTAGCCCTAAATTCTCTTGATGACCTAAATCCTGATTGTTTGGGAC ATGCAGGACTTGTCTATGAATATACATTGGGCGAAGAGAAGTTCACCTTTATTGAGAAAT GTAACAATCCTCGCTCTGTCACGTTATTGATCAAAGGACCAAATAAGCACACACTCACTC AAATCAAAGATGCAATAAGAGATGGTTTGAGAGCTGTTAAAAATGCTATTGATGATGGCT GTGTAGTTCCTGGTGCTGGTGCGGTGGAAGTGGCAATGGCAGAAGCCCTGATCAAATACA AGCCCAGTGTAAAGGGCAGGGCCCAACTTGGAGTTCAAGCATTTGCTGATGCGTTGCTCA TTATTCCCAAGGTTCTTGCTCAGAACTCTGGTTTTGACCTTCAGGAAACACTAGTTAAAG TTCAAGCAGAACATTCAGAATCAGGTCAACTTGTGGGTGTGGACTTGAACACAGGTGAGC CAATGGTAGCAGCAGAAGTAGGCATATGGGATAACTACTGTGTAAAGAAACAGCTTCTTC ACTCCTGCACTGTGATTGCCACCAATATTCTCCTGGTTGATGAGATCATGAGAGCTGGAA TGTCTTCTCTAAAAGGTTGAATTGAAGCTTCCTTTGTATCATCTGAATCATGAAGACTGT ACAGAGAGTGATCCAAAGAATATAGCTGTGGAATTTTTGTCCCAACCTTCAAAGGATTTT CAAAGGATTTTCTTTTTCCATATGAAAAAAGGAGAGAACACTGGCACCTATTCAAATTCT GAAGTTCTGAAATTATAATTACAGTATTTTAAAAATTGCACTGCAGTGCACACACATACA GTAGGCCATACTTACCCAATGAACAGGACATTTTGCTTTAGCTTTAGTGATATAAAAATA CATGTTAACTAAGCATATGTCATCTACCTTGTTATTAAATATTCCTTGAAAAGCAAATTT TAATGGTTTAATAATTTCTGCTCATGTATGTATTTTAATTTATCTCCAGTAGTTCCTTGT CATTAAGCATTCAAGTTTTTATGCTAATATAGATAAGACTTAAGTAACTTAAGGTTTTGA AAGCATTCATGCCTGTCTTGGTATAGATTCCAATGAATAAAACTATTGGATCAATTGGAC TTTTCAAGCTTTTAAAGTAGCTTTGGAGTTCCCTGGTGGTTTAGTGGGTTAAGGATCTGG TGTCGCTGCTGAAGCACAGGTTCCATCCCCGGCAGGGGAACTTCCAAATGCAGCAGGCAC GTCCAAAAATAAGTAAATAGAAATAATGAAGTAGCTTTGCTAAAATGCTCCCCAAAAAGG TTAAGTCATAGTGGAAAGATGAGTGAACTAGAAGCAAGGAAAGGGTAAGTGCAAAGTGAC AAAATAGAAAAAGCGGAAGTAAAAGCATGTCTGAAGCTGTGGTGAAGGATGAGGTGAGAT GAATAGACATCAGGCAGACTATATTTTCATACCTTGGGACATACATTTATGCTAAAATAG CCATCCCAAGCCCTCTAGTGTCGTCATCCAAATTACTGTTCCCTCCTACATGTTTCCACA AAACACTGGTACATCTCTGAAGCCCTTGAAAGTGAAGTTGTATGTTGCTAAACATTGTGT GTTGAGGATTCGCAGTGAGTGTGCAATAAATGTTAAGCTGAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTTAGCACGCCGGCTATCCTCATCCTCCTCTGCTGGATCAGCTATGGCGGCAGTGAAGA CACTGAACCCCAAGGCCGAGGTGGCCCGAGCCCAGGCGGCGCTCGCGGTCAACATCAGCG CGGCCCGGGGGCTGCAAGACGTGTTGAGGACCAACCTGGGGCCTAAGGGCACCATGAAGA TGCTTGTTTCTGGTGCTGGAGACATCAAGCTTACTAAAGATGGCAATGTGCTGCTTCATG AAATGCAAATTCAGCACCCAACAGCTTCCTTAATAGCCAAAGTAGCAACAGCCCAGGATG ACATAACTGGTGATGGTACCACTTCCAATGTCCTGATCATTGGAGAGCTCCTGAAGCAGG CGGACCTCTACATTTCTGAAGGTCTTCATCCCAGAATAATAACAGAAGGATTTGAAGCTG CAAAGGAAAAGGCACTTCAGTTTTTGGAACAAGTTAAAGTAAGCAAAGAGATGGACAGGG AAACGCTTATAGACGTGGCCAGAACATCTCTACGTACTAAAGTTCATGCTGAACTTGCTG ATGTCTTAACAGAGGCTGTAGTGGACTCTGTTTTGGCCATTAAAAAACAAGATGAACCTA TTGACCTCTTCATGGTTGAGATCATGGAGATGAAACATAAATCTGAAACCGATACAAGCT TGATCAGGGGTCTTGTTTTGGACCATGGGGCACGGCATCCGGACATGAAAAAGAGAGTAG AAGATGCATACATCCTCACGTGCAATGTGTCATTGGAATATGAAAAAACAGAAGTGAATT CTGGCTTTTTTTATAAGAGTGCAGAAGAGAGAGAGAAACTAGTAAGAGCTGAAAGAAAAT TCATTGAAGATAGAGTTAAGAAAATAGTAGAGTTGAAGAAGAAAGTCTGTGGTGATTCAG ATAAAGGATTTGTTGTTATTAATCAAAAGGGAATTGACCCCTTTTCCTTAGATGCTCTTG CAAAAGAAGGCATAGTAGCTCTACGTAGAGCTAAGAGGAGAAACATGGAAAGGCTGACTC TTGCTTGTGGTGGGGTAGCCCTAAATTCTCTTGATGACCTAAATCCTGATTGTTTGGGAC ATGCAGGACTTGTCTATGAATATACATTGGGCGAAGAGAAGTTCACCTTTATTGAGAAAT GTAACAATCCTCGCTCTGTCACGTTATTGATCAAAGGACCAAATAAGCACACACTCACTC AAATCAAAGATGCAATAAGAGATGGTTTGAGAGCTGTTAAAAATGCTATTGATGATGGCT GTGTAGTTCCTGGTGCTGGTGCGGTGGAAGTGGCAATGGCAGAAGCCCTGATCAAATACA AGCCCAGTGTAAAGGGCAGGGCCCAACTTGGAGTTCAAGCATTTGCTGATGCGTTGCTCA TTATTCCCAAGGTTCTTGCTCAGAACTCTGGTTTTGACCTTCAGGAAACACTAGTTAAAG TTCAAGCAGAACATTCAGAATCAGGTCAACTTGTGGGTGTGGACTTGAACACAGGTGAGC CAATGGTAGCAGCAGAAGTAGGCATATGGGATAACTACTGTGTAAAGAAACAGCTTCTTC ACTCCTGCACTGTGATTGCCACCAATATTCTCCTGGTTGATGAGATCATGAGAGCTGGAA TGTCTTCTCTAAAAGGTTGAATTGAAGCTTCCTTTGTATCATCTGAATCATGAAGACTGT ACAGAGAGTGATCCAAAGAATATAGCTGTGGAATTTTTGTCCCAACCTTCAAAGGATTTT CAAAGGATTTTCTTTTTCCATATGAAAAAAGGAGAGAACACTGGCACCTATTCAAATTCT GAAGTTCTGAAATTATAATTACAGTATTTTAAAAATTGCACTGCAGTGCACACACATACA GTAGGCCATACTTACCCAATGAACAGGACATTTTGCTTTAGCTTTAGTGATATAAAAATA CATGTTAACTAAGCATATGTCATCTACCTTGTTATTAAATATTCCTTGAAAAGCAAATTT TAATGGTTTAATAATTTCTGCTCATGTATGTATTTTAATTTATCTCCAGTAGTTCCTTGT CATTAAGCATTCAAGTTTTTATGCTAATATAGATAAGACTTAAGTAACTTAAGGTTTTGA AAGCATTCATGCCTGTCTTGGTATAGATTCCAATGAATAAAACTATTGGATCAATTGGAC TTTTCAAGCTTTTAAAGTAGCTTTGGAGTTCCCTGGTGGTTTAGTGGGTTAAGGATCTGG TGTCGCTGCTGAAGCACAGGTTCCATCCCCGGCAGGGGAACTTCCAAATGCAGCAGGCAC GTCCAAAAATAAGTAAATAGAAATAATGAAGTAGCTTTGCTAAAATGCTCCCCAAAAAGG TTAAGTCATAGTGGAAAGATGAGTGAACTAGAAGCAAGGAAAGGGTAAGTGCAAAGTGAC AAAATAGAAAAAGCGGAAGTAAAAGCATGTCTGAAGCTGTGGTGAAGGATGAGGTGAGAT GAATAGACATCAGGCAGACTATATTTTCATACCTTGGGACATACATTTATGCTAAAATAG CCATCCCAAGCCCTCTAGTGTCGTCATCCAAATTACTGTTCCCTCCTACATGTTTCCACA AAACACTGGTACATCTCTGAAGCCCTTGAAAGTGAAGTTGTATGTTGCTAAACATTGTGT GTTGAGGATTCGCAGTGAGTGTGCAATAAATGTTAAGCTGAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 45-589, - strand, RNAz p=0.970853 | |
| 45-164, - strand, RNAz p=0.666006 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 45-589, - strand, RNAz p=0.970853 | |
| 45-164, - strand, RNAz p=0.666006 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 45-182, gnl|bosTau2|chr19 (8856529-8856392) | |
| 45-182, gnl|canFam2|chr9 (41706170-41706027) | |
| 45-182, gnl|danRer3|chrNA (251245585-251245425) | |
| 45-182, gnl|dasNov1|scaffold_61426 (3973-4119) | |
| 45-182, gnl|echTel1|scaffold_325207 (45132-44986) | |
| 45-182, gnl|fr1|chrUn (44251824-44251684) | |
| 45-182, gnl|galGal2|chr19 (4579447-4579316) | |
| 45-182, gnl|hg17|chr17 (30312389-30312535) | |
| 45-182, gnl|Hg17|chr17 (30312525-30312388) | |
| 45-182, gnl|loxAfr1|scaffold_45868 (41534-41680) | |
| 45-182, gnl|mm7|chr11 (82845666-82845812) | |
| 45-182, gnl|Mm7|chr11 (82845802-82845665) | |
| 45-182, gnl|monDom2|scaffold_44 (7717218-7717072) | |
| 45-182, gnl|oryCun1|scaffold_97587 (982-1128) | |
| 45-182, gnl|panTro1|chr19 (33832517-33832663) | |
| 45-182, gnl|rheMac2|chr16 (30257751-30257897) | |
| 45-182, gnl|rn3|chr10 (70997117-70997263) | |
| 45-182, gnl|tetNig1|chr7 (7718985-7718846) | |
| 45-182, gnl|xenTro1|scaffold_63 (1160617-1160760) | |
| 354-1975, gnl|bosTau2|chr12 (32165909-32164285) | |
| 354-1975, gnl|Hg17|chr5 (14693811-14692212) | |
| 2309-2656, gnl|bosTau2|chr25 (23521308-23521658) | |
| 2309-2656, gnl|Hg17|chr7 (64672998-64673321) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 45-182, gnl|bosTau2|chr19 (8856529-8856392) | |
| 45-182, gnl|canFam2|chr9 (41706170-41706027) | |
| 45-182, gnl|danRer3|chrNA (251245585-251245425) | |
| 45-182, gnl|dasNov1|scaffold_61426 (3973-4119) | |
| 45-182, gnl|echTel1|scaffold_325207 (45132-44986) | |
| 45-182, gnl|fr1|chrUn (44251824-44251684) | |
| 45-182, gnl|galGal2|chr19 (4579447-4579316) | |
| 45-182, gnl|hg17|chr17 (30312389-30312535) | |
| 45-182, gnl|Hg17|chr17 (30312525-30312388) | |
| 45-182, gnl|loxAfr1|scaffold_45868 (41534-41680) | |
| 45-182, gnl|mm7|chr11 (82845666-82845812) | |
| 45-182, gnl|Mm7|chr11 (82845802-82845665) | |
| 45-182, gnl|monDom2|scaffold_44 (7717218-7717072) | |
| 45-182, gnl|oryCun1|scaffold_97587 (982-1128) | |
| 45-182, gnl|panTro1|chr19 (33832517-33832663) | |
| 45-182, gnl|rheMac2|chr16 (30257751-30257897) | |
| 45-182, gnl|rn3|chr10 (70997117-70997263) | |
| 45-182, gnl|tetNig1|chr7 (7718985-7718846) | |
| 45-182, gnl|xenTro1|scaffold_63 (1160617-1160760) | |
| 354-1975, gnl|bosTau2|chr12 (32165909-32164285) | |
| 354-1975, gnl|Hg17|chr5 (14693811-14692212) | |
| 2309-2656, gnl|bosTau2|chr25 (23521308-23521658) | |
| 2309-2656, gnl|Hg17|chr7 (64672998-64673321) |
| Expressed library(ies): 51 entry(ies) | More info |
| Expressed library(ies): 51 entry(ies) | Help | Less info |
| spl (0.859107) | |
| cmu (0.745573) | |
| tbr (0.616713) | |
| aor (0.585823) | |
| nco (0.485201) | |
| mgp (0.461361) | |
| bfe (0.449573) | |
| thg (0.380373) | |
| mgm (0.360685) | |
| ecc (0.345105) | |
| jca (0.34188) | |
| spc (0.340097) | |
| vin (0.332557) | |
| isp (0.300752) | |
| fce (0.271592) | |
| lyg (0.266205) | |
| ova (0.258264) | |
| ret (0.257467) | |
| cbe (0.239234) | |
| nms (0.213858) | |
| tes (0.207814) | |
| hea (0.204499) | |
| jej (0.197844) | |
| ldo (0.194005) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| gul (0.177588) | |
| fty (0.17584) | |
| ton (0.1755) | |
| sin (0.174948) | |
| rec (0.17307) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| mga (0.160205) | |
| fco (0.157208) | |
| ski (0.146735) | |
| lin (0.145603) | |
| pty (0.142714) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| che (0.136314) | |
| pla (0.133672) | |
| ute (0.132784) | |
| kid (0.129735) | |
| sug (0.127291) | |
| ese (0.126502) | |
| tra (0.123092) | |
| ebs (0.118301) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 51 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.859107) | |
| cmu (0.745573) | |
| tbr (0.616713) | |
| aor (0.585823) | |
| nco (0.485201) | |
| mgp (0.461361) | |
| bfe (0.449573) | |
| thg (0.380373) | |
| mgm (0.360685) | |
| ecc (0.345105) | |
| jca (0.34188) | |
| spc (0.340097) | |
| vin (0.332557) | |
| isp (0.300752) | |
| fce (0.271592) | |
| lyg (0.266205) | |
| ova (0.258264) | |
| ret (0.257467) | |
| cbe (0.239234) | |
| nms (0.213858) | |
| tes (0.207814) | |
| hea (0.204499) | |
| jej (0.197844) | |
| ldo (0.194005) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| gul (0.177588) | |
| fty (0.17584) | |
| ton (0.1755) | |
| sin (0.174948) | |
| rec (0.17307) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| mga (0.160205) | |
| fco (0.157208) | |
| ski (0.146735) | |
| lin (0.145603) | |
| pty (0.142714) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| che (0.136314) | |
| pla (0.133672) | |
| ute (0.132784) | |
| kid (0.129735) | |
| sug (0.127291) | |
| ese (0.126502) | |
| tra (0.123092) | |
| ebs (0.118301) | |
| cty (0.10408) | |
| eje (0.0988338) |