Non-Coding RNA Search

Ss1.1-ruio31_c24.5

Sequence:


               
               CTTGTATGAGGGCTACGGACAGACAGAAGTGGGATTAATTTGTGCCAGTTACAAAGGACA
AGAAATTAAACCAGGCTCAATGGGGATAAGAGCACCACCCCATGATGTTCAGATTATAGA
TGAAAATGGCGACGTCCTACCACCTGGAAAAGAAGGGGAGATTTCCATCAGACTAACACC
TACACGACACTTCTCTTTGTTCTCCAAATACGTGGACAATCCAGAGAAAACTGCTGCCAC
CATAAGAGGGGGTTTTTATGTCACGGGAGACAGAGGAGTGATGGACAGTGACGGTTATTT
CCGGTTTGTCGGCAGAGCTGATGATGTCATTATATCCGCTGGGTACCGTATTGGGCCATT
TGAAGTGGAGAGTGCACTAATTGAGCACCCAGCAGTTGCTGAATCAGCTGTTGTCAGTAG
TCCAGATCCAATCAGAGGAGAGGTAGTGAAAGCTTTTGTTGTCTTATCCGCACCCTTTAA
GTCATCCAATCCAGAGCAATTAACTCTTGAACTTCAGGATCATGTAAAAAAATCAACCGC
ACCTTACAAATATCCAAGAAAGGTGGAATTTGTTCAAGAACTCCCCAAGACAGTCACTGG
GAAAATCAAACGCAACATTTTAAGAGACCGTGAATGGGGTCGAGCATAGCCTGAGAAGAA
AACTGTGGCATCAAGTAGTTAACAGGGTTGCTTCCTTTCAGTTCTTGCTTCCTGATAATT
CAGGGACTATTCTCTTAAAACGCTTAAGACTGTTCCTAGTTAAAAACTCAACTGAGTTTT
GTTTTGTACTTAGCCAAAAAATAAATAAGTAAAAATCTAAAGATATTTGGGAAGAAAATT
CTTATGGTGAGCAAACCAACAAAGACAATGATTAATGACTTGTATTGTTTAAAGTAGTCA
GGATCAAATAATTAGAAATGTACAACGGACAAGGAATTTATTGTGCCTGATTAATTAAAA
ATAAAGATCAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGTATGAGGGCTACGGACAGACAGAAGTGGGATTAATTTGTGCCAGTTACAAAGGACA
AGAAATTAAACCAGGCTCAATGGGGATAAGAGCACCACCCCATGATGTTCAGATTATAGA
TGAAAATGGCGACGTCCTACCACCTGGAAAAGAAGGGGAGATTTCCATCAGACTAACACC
TACACGACACTTCTCTTTGTTCTCCAAATACGTGGACAATCCAGAGAAAACTGCTGCCAC
CATAAGAGGGGGTTTTTATGTCACGGGAGACAGAGGAGTGATGGACAGTGACGGTTATTT
CCGGTTTGTCGGCAGAGCTGATGATGTCATTATATCCGCTGGGTACCGTATTGGGCCATT
TGAAGTGGAGAGTGCACTAATTGAGCACCCAGCAGTTGCTGAATCAGCTGTTGTCAGTAG
TCCAGATCCAATCAGAGGAGAGGTAGTGAAAGCTTTTGTTGTCTTATCCGCACCCTTTAA
GTCATCCAATCCAGAGCAATTAACTCTTGAACTTCAGGATCATGTAAAAAAATCAACCGC
ACCTTACAAATATCCAAGAAAGGTGGAATTTGTTCAAGAACTCCCCAAGACAGTCACTGG
GAAAATCAAACGCAACATTTTAAGAGACCGTGAATGGGGTCGAGCATAGCCTGAGAAGAA
AACTGTGGCATCAAGTAGTTAACAGGGTTGCTTCCTTTCAGTTCTTGCTTCCTGATAATT
CAGGGACTATTCTCTTAAAACGCTTAAGACTGTTCCTAGTTAAAAACTCAACTGAGTTTT
GTTTTGTACTTAGCCAAAAAATAAATAAGTAAAAATCTAAAGATATTTGGGAAGAAAATT
CTTATGGTGAGCAAACCAACAAAGACAATGATTAATGACTTGTATTGTTTAAAGTAGTCA
GGATCAAATAATTAGAAATGTACAACGGACAAGGAATTTATTGTGCCTGATTAATTAAAA
ATAAAGATCAGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61819687|ref|XP_596710.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61819687|ref|XP_596710.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               214-332, + strand, RNAz p=0.703289

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               214-332, + strand, RNAz p=0.703289

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               214-345, gnl|bosTau2|chr25 (18387975-18388106)
               

               
               214-345, gnl|Hg17|chr16 (20648052-20648183)
               

               
               214-345, gnl|Mm7|chr7 (115633377-115633508)
               


               
               561-972, gnl|bosTau2|chr25 (18392443-18392852)
               

               
               561-972, gnl|Hg17|chr16 (20651728-20652132)
               

               
               561-972, gnl|Mm7|chr7 (115636539-115636990)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               214-345, gnl|bosTau2|chr25 (18387975-18388106)
               

               
               214-345, gnl|Hg17|chr16 (20648052-20648183)
               

               
               214-345, gnl|Mm7|chr7 (115633377-115633508)
               


               
               561-972, gnl|bosTau2|chr25 (18392443-18392852)
               

               
               561-972, gnl|Hg17|chr16 (20651728-20652132)
               

               
               561-972, gnl|Mm7|chr7 (115636539-115636990)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               lun (1.3544)
               

               
               kid (1.16762)
               

               
               cki (0.165235)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (1.3544)
               

               
               kid (1.16762)
               

               
               cki (0.165235)

	214-345, gnl\|bosTau2\|chr25 (18387975-18388106)
	214-345, gnl\|Hg17\|chr16 (20648052-20648183)
	214-345, gnl\|Mm7\|chr7 (115633377-115633508)

	561-972, gnl\|bosTau2\|chr25 (18392443-18392852)
	561-972, gnl\|Hg17\|chr16 (20651728-20652132)
	561-972, gnl\|Mm7\|chr7 (115636539-115636990)