Non-Coding RNA Search

Ss1.1-ruio31_l17.5

Sequence:


               
               ACCTGAGGGCGACTTGCGAGGTGGCTACCGCCGCACCTCCGCCTCTGTCCCGAGACCAGG
CCGCGTCCCGAGGCCGAGCAGTCCTGAGGCAGCCACTGGGTAGCGGCTCCCGAGAGGACG
AGCGCGACTCCCGGACCCCGGGAGTCGGGGGGTGTGGGGCCAGCGCTCCGAGGCCGTTGG
TCCTCTCCGGTCCTCTCCGGGTAACCGTAGGCGTCCGGCCAGGCGGAGTCCACGTGACCC
CGGGGCGCCGGGTAGGGAACATGGCTGCCGCCAGGCCGCTGTCCCGCTTCTGGGAGTGGG
GAAAGAACATCGTGTGCGTGGGCAGAAACTACGCGGACCACGTCAAGGAGATGCAGAGTA
CGGTGCTGAGCGAGCCGGTGCTCTTCCTGAAACCGTCCACCGCCTACGCCCCCGAGGGCT
CGCCGGTCCTCATACCCTCCTACAGCCGTAACCTGCACCACGAGCTCGAGCTGGGCGTGG
TGATGGGCCAGCGCTGCCGCGCCGTCTCGGAGGTCGCGGCCATGGACTACGTGGCCGGCT
ATGCTCTCTGCCTGGACATGACTTCCAGGGACGTGCAGGACGAGTGCAAGAAGAAGGGGC
TGCCCTGGACTCTGGCCAAGAGCTTCACGGCCTCCTGCCCGGTCAGTGCGTTCGTACCCA
AGGAGAAGATCCCTGACCCTCACAACCTGAAGCTCTGGCTCAAGGTCAACGGCGAACTCC
GGCAGGAGGGTGAGACATCCTCCATGATTTTTTCCATCCCCTACATCATCAGCTACGTTT
CGAAGATAATGACCTTGGAAAAAGGAGATATTATCTTGACCGGGACGCCAAAGGGAGTGG
GTCCAGTTAAAGAAAACGATGAGATCCATGCTGGCATACACGGGGTCGTCAGTATGAGAT
TTAAGGTGGAAAGGCCAGAATATTGAGTCTGTACAAAGCACCCTAACTTCTTAACACATG
ATCCAAGGGAATAAGACAAAAGCAAGCAAAGTTTAATTAAACGTGACAATCCTTTAATAA
GAAGCCAATTAAAAAAAATGATTGGACTACAGTGTTTCAACTCGAGGAAGATGGACTGTC
CAAAAAAACCTGATCTAGAAGAGCTGGGCCAGAAATGGAAATGAGAAATAGTGCCTTCTC
GGAAACAACGGGCCAAATGTTCAGAAGACTTTTCCTTTGCTAAATCTGGATTGGTTCAGT
GGATCACTCTGGGACTGGGTTTTGGAGACTAAAATCTGCAAAGGAAGTGGATTAGCACGA
TTCATCGGTGCTTCCCAAATTTGCTTAATCATGAAAATTATCCGGAGATATTTGTAAAAA
TAAAAATTTCCAAGTTACTGGCCCATCCCAGGCCCAATGTATGAATTAATGGAATTGATA
TCCAGCACTCCAAGTGATTCTTATCATGGAAAACCACTGCTCCACACAATTAAAAGTGTT
ACTTAGGGAGTAATTAATGATGACCTCACTCCTTTACTTATTCTGGCCCATAGATTCTGA
TTTGGAGAGAAAACTTTGAAACTATTGTTTCTCAAATAAATATGCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCTGAGGGCGACTTGCGAGGTGGCTACCGCCGCACCTCCGCCTCTGTCCCGAGACCAGG
CCGCGTCCCGAGGCCGAGCAGTCCTGAGGCAGCCACTGGGTAGCGGCTCCCGAGAGGACG
AGCGCGACTCCCGGACCCCGGGAGTCGGGGGGTGTGGGGCCAGCGCTCCGAGGCCGTTGG
TCCTCTCCGGTCCTCTCCGGGTAACCGTAGGCGTCCGGCCAGGCGGAGTCCACGTGACCC
CGGGGCGCCGGGTAGGGAACATGGCTGCCGCCAGGCCGCTGTCCCGCTTCTGGGAGTGGG
GAAAGAACATCGTGTGCGTGGGCAGAAACTACGCGGACCACGTCAAGGAGATGCAGAGTA
CGGTGCTGAGCGAGCCGGTGCTCTTCCTGAAACCGTCCACCGCCTACGCCCCCGAGGGCT
CGCCGGTCCTCATACCCTCCTACAGCCGTAACCTGCACCACGAGCTCGAGCTGGGCGTGG
TGATGGGCCAGCGCTGCCGCGCCGTCTCGGAGGTCGCGGCCATGGACTACGTGGCCGGCT
ATGCTCTCTGCCTGGACATGACTTCCAGGGACGTGCAGGACGAGTGCAAGAAGAAGGGGC
TGCCCTGGACTCTGGCCAAGAGCTTCACGGCCTCCTGCCCGGTCAGTGCGTTCGTACCCA
AGGAGAAGATCCCTGACCCTCACAACCTGAAGCTCTGGCTCAAGGTCAACGGCGAACTCC
GGCAGGAGGGTGAGACATCCTCCATGATTTTTTCCATCCCCTACATCATCAGCTACGTTT
CGAAGATAATGACCTTGGAAAAAGGAGATATTATCTTGACCGGGACGCCAAAGGGAGTGG
GTCCAGTTAAAGAAAACGATGAGATCCATGCTGGCATACACGGGGTCGTCAGTATGAGAT
TTAAGGTGGAAAGGCCAGAATATTGAGTCTGTACAAAGCACCCTAACTTCTTAACACATG
ATCCAAGGGAATAAGACAAAAGCAAGCAAAGTTTAATTAAACGTGACAATCCTTTAATAA
GAAGCCAATTAAAAAAAATGATTGGACTACAGTGTTTCAACTCGAGGAAGATGGACTGTC
CAAAAAAACCTGATCTAGAAGAGCTGGGCCAGAAATGGAAATGAGAAATAGTGCCTTCTC
GGAAACAACGGGCCAAATGTTCAGAAGACTTTTCCTTTGCTAAATCTGGATTGGTTCAGT
GGATCACTCTGGGACTGGGTTTTGGAGACTAAAATCTGCAAAGGAAGTGGATTAGCACGA
TTCATCGGTGCTTCCCAAATTTGCTTAATCATGAAAATTATCCGGAGATATTTGTAAAAA
TAAAAATTTCCAAGTTACTGGCCCATCCCAGGCCCAATGTATGAATTAATGGAATTGATA
TCCAGCACTCCAAGTGATTCTTATCATGGAAAACCACTGCTCCACACAATTAAAAGTGTT
ACTTAGGGAGTAATTAATGATGACCTCACTCCTTTACTTATTCTGGCCCATAGATTCTGA
TTTGGAGAGAAAACTTTGAAACTATTGTTTCTCAAATAAATATGCTGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61842257|ref|XP_586206.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61842257|ref|XP_586206.1|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               72-1546, gnl|bosTau2|chr25 (3207940-3206410)
               

               
               72-1546, gnl|Hg17|chr16 (1816985-1818903)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               72-1546, gnl|bosTau2|chr25 (3207940-3206410)
               

               
               72-1546, gnl|Hg17|chr16 (1816985-1818903)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               mgp (0.461361)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               cst (0.280073)
               

               
               kid (0.259471)
               

               
               hea (0.204499)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               cly (0.120642)
               

               
               jej (0.0989218)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.461361)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               cst (0.280073)
               

               
               kid (0.259471)
               

               
               hea (0.204499)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               cly (0.120642)
               

               
               jej (0.0989218)

	72-1546, gnl\|bosTau2\|chr25 (3207940-3206410)
	72-1546, gnl\|Hg17\|chr16 (1816985-1818903)

	mgp (0.461361)
	vin (0.332557)
	sme (0.305437)
	cst (0.280073)
	kid (0.259471)
	hea (0.204499)
	nje (0.16592)
	cki (0.165235)
	lin (0.145603)
	csk (0.140746)
	nmm (0.132802)
	ova (0.129132)
	cly (0.120642)
	jej (0.0989218)