Non-Coding RNA Search

Ss1.1-ruio32_a6.5

Sequence:


               
               CTCCGAGCCGCGGTGCCCCAATCTATCCTGGACCCGGGGTCTCGCTCGCTGAAAGCGACT
CGGAATCCACTAGCGTCTTTCACTTCCAGTGCAAGAAATGTAACTGCGTTGAGCGTGTAT
AGCCGGCTGGTGTCGTAAAGCGGGATAATCTTACCGTTAACCCTTCATTTAAGTTCAGAC
GTCTGTGGGGTCGCTCTTGAACGCAACGATTTAGAGAGAGCAAGGAAGACCAAGAAAGAA
ACAACAATATAATGCCCTGCCCAACGCAGCGGCTTGCAGCTGCAGTCTACACGGGCCCCG
GCAGTTTAGAAAGCGCTACTTTCTCCGCAGTCCTGGGCTGCCACCTCTACTTTGCTCACT
CTTCGCTCAGCTGCGAATTCGTCGAGCGGCTACAGCACGAACTCAGAGCGATATCTCACT
TCCCAGAAGAGCCATGTAAAAGGAATGAGACAAAGGCTTCTTTCCTCGAGTGTTAATTAT
TTTGAACTCGTAAAATGACCTTAAGAAAGCAATTGTAGCTACTTAAGAGGTAATAATACT
TTTTCTGGCTAGAAGCATCACGCAGAATTCTTTTGCTCCACAGCTTTGAGGGAGCAGGGA
GCTGGGCTCGGACGAGATGGCCCTGGTGCCCTATGAGGAGACCGCAGGAATGGGGCTGCA
GAGATTCCACAAGCCTCTTGCCACCTTCTCCTTTGCAAACCACAGGATCCAGATCCAGCA
GGACTGGAAGCAGCTGGGAGTCGCTGCCGTGGTTTGGGACGCGCCGCC------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------TTTTCCTTACCA
AAGTTTAGTTTAAGAGGATAAGCTGTGTTTGAGGTGCATAAGGGATGTTCATCATGGTGA
ACATGTCCAGGAGGAGAGTGCTTCTCTAACTTTTCCACTTAAGTATCCACAGTGGCAGAG
GAAATGAAACGTGGGGCACGGTCCAAAGCAGCTGTTACTAATGCGAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCGAGCCGCGGTGCCCCAATCTATCCTGGACCCGGGGTCTCGCTCGCTGAAAGCGACT
CGGAATCCACTAGCGTCTTTCACTTCCAGTGCAAGAAATGTAACTGCGTTGAGCGTGTAT
AGCCGGCTGGTGTCGTAAAGCGGGATAATCTTACCGTTAACCCTTCATTTAAGTTCAGAC
GTCTGTGGGGTCGCTCTTGAACGCAACGATTTAGAGAGAGCAAGGAAGACCAAGAAAGAA
ACAACAATATAATGCCCTGCCCAACGCAGCGGCTTGCAGCTGCAGTCTACACGGGCCCCG
GCAGTTTAGAAAGCGCTACTTTCTCCGCAGTCCTGGGCTGCCACCTCTACTTTGCTCACT
CTTCGCTCAGCTGCGAATTCGTCGAGCGGCTACAGCACGAACTCAGAGCGATATCTCACT
TCCCAGAAGAGCCATGTAAAAGGAATGAGACAAAGGCTTCTTTCCTCGAGTGTTAATTAT
TTTGAACTCGTAAAATGACCTTAAGAAAGCAATTGTAGCTACTTAAGAGGTAATAATACT
TTTTCTGGCTAGAAGCATCACGCAGAATTCTTTTGCTCCACAGCTTTGAGGGAGCAGGGA
GCTGGGCTCGGACGAGATGGCCCTGGTGCCCTATGAGGAGACCGCAGGAATGGGGCTGCA
GAGATTCCACAAGCCTCTTGCCACCTTCTCCTTTGCAAACCACAGGATCCAGATCCAGCA
GGACTGGAAGCAGCTGGGAGTCGCTGCCGTGGTTTGGGACGCGCCGCC------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------TTTTCCTTACCA
AAGTTTAGTTTAAGAGGATAAGCTGTGTTTGAGGTGCATAAGGGATGTTCATCATGGTGA
ACATGTCCAGGAGGAGAGTGCTTCTCTAACTTTTCCACTTAAGTATCCACAGTGGCAGAG
GAAATGAAACGTGGGGCACGGTCCAAAGCAGCTGTTACTAATGCGAGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57110965|ref|XP_536045.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57110965|ref|XP_536045.1|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-763, gnl|bosTau2|chr2 (62267198-62267975)
               

               
               1-763, gnl|Hg17|chr2 (208315264-208314459)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-763, gnl|bosTau2|chr2 (62267198-62267975)
               

               
               1-763, gnl|Hg17|chr2 (208315264-208314459)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cki (0.165235)
               

               
               kid (0.129735)
               

               
               ldo (0.0970026)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)
               

               
               kid (0.129735)
               

               
               ldo (0.0970026)

	1-763, gnl\|bosTau2\|chr2 (62267198-62267975)
	1-763, gnl\|Hg17\|chr2 (208315264-208314459)