Non-Coding RNA Search

Ss1.1-ruio32_d18.5

Sequence:


               
               AGAGAGAACTAGTCTCGAGAATTTTTTTTAAATGAAATGAAAAAGTTTCAAAATCTTGAG
TATTGGCTAGTTCTCTTAACACTGGCTAAAGTAACATTTCATAAACACTTTACAAGTCTG
GTCCATATTTAAGAATACCTGATGCTTATAAAATAGATAATAATTAATGGTAACAAAATG
ATTCTTTCAGTGCATTTAACATGTTAACTTATTTTAAAATATTTGAAGTGAGATGGTTGT
GTTGAGGTGAAAATATCACTGGACAAGGAGGAAGGTGACTTAGATTCTAGTTTTGTGTCT
TTTACAATTTGGGGCAAATCACTTACTCTCCATTTTTTCATGCTTAAAAGGCATCTCAAA
GGCTGTATCTAGCATTACAACTATGTGATTTACATTTACTTTACATAAGGCTATACCTAT
TTGTCAGTCTCAGCACAATCTGTAACTTTTCACCTGTGTCATCACCTTCAGTGCCAGCCT
TAGGCAAAATTGTGCAAGAGGTGAAGTGTATTTTTGAATATTCATTCTCTGGTTTGAGGA
CTTCTTCCACATTAGTGTTGTCTTGCCTGCCTACCCTTCTACATACCCCATGACTAGATG
CTTTTTCTTTTAATATTTCTGATTCCCCCAACCTCAAGATTTATTGCTGCTTTGGTTATC
TCCATGAAGGCTTCCCATCAAGTCACATCGAATAGCCTACATCTGACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGAGAACTAGTCTCGAGAATTTTTTTTAAATGAAATGAAAAAGTTTCAAAATCTTGAG
TATTGGCTAGTTCTCTTAACACTGGCTAAAGTAACATTTCATAAACACTTTACAAGTCTG
GTCCATATTTAAGAATACCTGATGCTTATAAAATAGATAATAATTAATGGTAACAAAATG
ATTCTTTCAGTGCATTTAACATGTTAACTTATTTTAAAATATTTGAAGTGAGATGGTTGT
GTTGAGGTGAAAATATCACTGGACAAGGAGGAAGGTGACTTAGATTCTAGTTTTGTGTCT
TTTACAATTTGGGGCAAATCACTTACTCTCCATTTTTTCATGCTTAAAAGGCATCTCAAA
GGCTGTATCTAGCATTACAACTATGTGATTTACATTTACTTTACATAAGGCTATACCTAT
TTGTCAGTCTCAGCACAATCTGTAACTTTTCACCTGTGTCATCACCTTCAGTGCCAGCCT
TAGGCAAAATTGTGCAAGAGGTGAAGTGTATTTTTGAATATTCATTCTCTGGTTTGAGGA
CTTCTTCCACATTAGTGTTGTCTTGCCTGCCTACCCTTCTACATACCCCATGACTAGATG
CTTTTTCTTTTAATATTTCTGATTCCCCCAACCTCAAGATTTATTGCTGCTTTGGTTATC
TCCATGAAGGCTTCCCATCAAGTCACATCGAATAGCCTACATCTGACC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               20-702, gnl|bosTau2|chr5 (51704879-51705565)
               

               
               20-702, gnl|Hg17|chr12 (25252718-25252043)
               

               
               20-702, gnl|Mm7|chr6 (145310277-145309674)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-702, gnl|bosTau2|chr5 (51704879-51705565)
               

               
               20-702, gnl|Hg17|chr12 (25252718-25252043)
               

               
               20-702, gnl|Mm7|chr6 (145310277-145309674)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ebs (0.118301)

	20-702, gnl\|bosTau2\|chr5 (51704879-51705565)
	20-702, gnl\|Hg17\|chr12 (25252718-25252043)
	20-702, gnl\|Mm7\|chr6 (145310277-145309674)