Non-Coding RNA Search

Ss1.1-ruio32_d2.5

Sequence:


               
               GTGTGTGTGTGTGTGTGCTTGCTTCTCCTTCGATGAAATAGAAGCCCCTCTTTATTGTGT
ACCTTAAGACCAGGAATGATTAAATCATCTTCCCCAAAACGTGTGCTTTCACTGTTTACA
AGTAAAACCTAAAGGGCAAGAAACTTCGTTGATTTCACAGAGCTACCAACTGTCCTTGAT
GTAACTGTGTGTGTCTGAACTACAGAGTAAGTCTACTTGTGGAAATGATTTGCCGGTGGC
AGTGGTCCCTTTAATAACAGTACTAGTAACAAAGTGTGTTTCTTTGTTAGCCAGTTTAAG
TGGATCCCGTGGTAACTTAAACTGTTGTTCTCATCCCTCATATGGGGCATTTTTCTTTAA
CAAAGAATGGTTTCAGTGAAACAATCTAGCAGAGAATTAAGGTCAGAACCTTTTTAAATA
ATAGTCTTACTGATAAAGTTTGTACTTCTTTCCTCAAGCTTTTCTAAGCTTAAATACGGC
ATAGCTTCCAGCTGTGTAAACTGTATTATGAAAGAGTATGTAAAGAGAACCTACAGTAAA
GCGCAGTCCTTAATTTGTGTATAATGGAATGTTATTTACAATGTAACACTGTAAATAAGA
AAGCAAAATTTATGGGAAAATTCAATATTATCTTTGTTTCTTGTTTAAATATATTTTTAA
GATAAAGGCACAAAAATAAAAGAAGCATATTACTGGGTATACCGTGTGACTCCTCTTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTGTGTGTGTGTGTGCTTGCTTCTCCTTCGATGAAATAGAAGCCCCTCTTTATTGTGT
ACCTTAAGACCAGGAATGATTAAATCATCTTCCCCAAAACGTGTGCTTTCACTGTTTACA
AGTAAAACCTAAAGGGCAAGAAACTTCGTTGATTTCACAGAGCTACCAACTGTCCTTGAT
GTAACTGTGTGTGTCTGAACTACAGAGTAAGTCTACTTGTGGAAATGATTTGCCGGTGGC
AGTGGTCCCTTTAATAACAGTACTAGTAACAAAGTGTGTTTCTTTGTTAGCCAGTTTAAG
TGGATCCCGTGGTAACTTAAACTGTTGTTCTCATCCCTCATATGGGGCATTTTTCTTTAA
CAAAGAATGGTTTCAGTGAAACAATCTAGCAGAGAATTAAGGTCAGAACCTTTTTAAATA
ATAGTCTTACTGATAAAGTTTGTACTTCTTTCCTCAAGCTTTTCTAAGCTTAAATACGGC
ATAGCTTCCAGCTGTGTAAACTGTATTATGAAAGAGTATGTAAAGAGAACCTACAGTAAA
GCGCAGTCCTTAATTTGTGTATAATGGAATGTTATTTACAATGTAACACTGTAAATAAGA
AAGCAAAATTTATGGGAAAATTCAATATTATCTTTGTTTCTTGTTTAAATATATTTTTAA
GATAAAGGCACAAAAATAAAAGAAGCATATTACTGGGTATACCGTGTGACTCCTCTTCTC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               285-402, - strand, RNAz p=0.717513
               

               
               443-602, + strand, RNAz p=0.687781

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               285-402, - strand, RNAz p=0.717513
               

               
               443-602, + strand, RNAz p=0.687781

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_017714, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_017714, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-716, gnl|bosTau2|chr13 (3122481-3123196)
               

               
               1-716, gnl|Hg17|chr20 (13318804-13318068)
               

               
               1-716, gnl|Mm7|chr2 (139575009-139574309)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-716, gnl|bosTau2|chr13 (3122481-3123196)
               

               
               1-716, gnl|Hg17|chr20 (13318804-13318068)
               

               
               1-716, gnl|Mm7|chr2 (139575009-139574309)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fco (0.314416)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               kid (0.129735)
               

               
               thg (0.126791)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               kid (0.129735)
               

               
               thg (0.126791)

	285-402, - strand, RNAz p=0.717513
	443-602, + strand, RNAz p=0.687781

	1-716, gnl\|bosTau2\|chr13 (3122481-3123196)
	1-716, gnl\|Hg17\|chr20 (13318804-13318068)
	1-716, gnl\|Mm7\|chr2 (139575009-139574309)

	fco (0.314416)
	cmu (0.186393)
	sag (0.182715)
	kid (0.129735)
	thg (0.126791)