Non-Coding RNA Search

Ss1.1-ruio32_f11.5

Sequence:


               
               GGAGAAGTGCAAGAACGAGGGACTGACCAGGTCCATCGGTGTGTCCAACTTTANCTGCAA
GCAGCTGGAGAGGATCTTGAACAAGCCAGGGCTCAAGTACAAGCCCGTCTGCAACCAGGT
GGAGTGTCACCCTTACTTAAACCAGAGCAAACTCCTGGAATTCTGCCGTTCCCACGACAT
TCTCCTTGTTGCATATGCTACTTTGGGGTCTGATGCAAGGAAGAAATGGGTGATCAAGAA
CAAACCAAGTCTCCTGCAGGACCCAGTACTCAATGCCATTGCTGAAAAGCACAGGCGAAC
TCCAGCCCAGGTTGCCCTGCGCTACCAGCTGCAGCGGGGGGTGGTGGCCCTGGCCAAGAG
CTTCAGTGAGCAGAGGATGAAAGAGAACTTCCAGGTTTTTGAATTCGAGTTGACCCCAGA
GGATATGGAAAGCCTGGACGGCCTAAACAGAAACATGTGCTATTTGCAAGATCTATTTTC
TGGTCATACAGATGATGCTTCTTACGGCAATGATTAAGAGCAGTGTCTGTGGTTGCCCAG
ATTTTGGTTCATGCTGGGGGACATCTCAAGGGTGAGAAAGTAACCGCTTCATTCCCTGTC
ACTTAGCCTGACGTCGCGATATGGCTAGAGTCCTTCGATCAAGAAATAAAAGTCTCCAAA
CCCAGTCTTTCTCGCCCAAAGTAAATAAGGATACATTTGGAACAATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGAAGTGCAAGAACGAGGGACTGACCAGGTCCATCGGTGTGTCCAACTTTANCTGCAA
GCAGCTGGAGAGGATCTTGAACAAGCCAGGGCTCAAGTACAAGCCCGTCTGCAACCAGGT
GGAGTGTCACCCTTACTTAAACCAGAGCAAACTCCTGGAATTCTGCCGTTCCCACGACAT
TCTCCTTGTTGCATATGCTACTTTGGGGTCTGATGCAAGGAAGAAATGGGTGATCAAGAA
CAAACCAAGTCTCCTGCAGGACCCAGTACTCAATGCCATTGCTGAAAAGCACAGGCGAAC
TCCAGCCCAGGTTGCCCTGCGCTACCAGCTGCAGCGGGGGGTGGTGGCCCTGGCCAAGAG
CTTCAGTGAGCAGAGGATGAAAGAGAACTTCCAGGTTTTTGAATTCGAGTTGACCCCAGA
GGATATGGAAAGCCTGGACGGCCTAAACAGAAACATGTGCTATTTGCAAGATCTATTTTC
TGGTCATACAGATGATGCTTCTTACGGCAATGATTAAGAGCAGTGTCTGTGGTTGCCCAG
ATTTTGGTTCATGCTGGGGGACATCTCAAGGGTGAGAAAGTAACCGCTTCATTCCCTGTC
ACTTAGCCTGACGTCGCGATATGGCTAGAGTCCTTCGATCAAGAAATAAAAGTCTCCAAA
CCCAGTCTTTCTCGCCCAAAGTAAATAAGGATACATTTGGAACAATCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61836971|ref|XP_615591.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61836971|ref|XP_615591.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-121, gnl|bosTau2|chr13 (28841393-28841273)
               

               
               1-121, gnl|Hg17|chr10 (5131524-5131644)
               

               
               1-121, gnl|Mm7|chr13 (4123342-4123462)
               


               
               228-396, gnl|bosTau2|chr13 (31975778-31975610)
               

               
               228-396, gnl|Hg17|chr10 (5134676-5134844)
               

               
               228-396, gnl|Mm7|chr13 (4127295-4127463)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-121, gnl|bosTau2|chr13 (28841393-28841273)
               

               
               1-121, gnl|Hg17|chr10 (5131524-5131644)
               

               
               1-121, gnl|Mm7|chr13 (4123342-4123462)
               


               
               228-396, gnl|bosTau2|chr13 (31975778-31975610)
               

               
               228-396, gnl|Hg17|chr10 (5134676-5134844)
               

               
               228-396, gnl|Mm7|chr13 (4127295-4127463)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               kid (0.129735)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.129735)

	1-121, gnl\|bosTau2\|chr13 (28841393-28841273)
	1-121, gnl\|Hg17\|chr10 (5131524-5131644)
	1-121, gnl\|Mm7\|chr13 (4123342-4123462)

	228-396, gnl\|bosTau2\|chr13 (31975778-31975610)
	228-396, gnl\|Hg17\|chr10 (5134676-5134844)
	228-396, gnl\|Mm7\|chr13 (4127295-4127463)