Ss1.1-ruio32_f20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACGGTCCGTCTCGCTGCCCGCACGCCGTGCCGCTGCCCCGCAGAAATGCTTCGATTACCC GCAGTCCTTCGTCAGATTAGGCCGGTGTCCAGGGCACTGGCTCCTCATCTCACTCGGGCT TATGCCAAAGATGTAAAATTTGGTGCAGATGCTCGAGCCTTAATGCTTCAAGGTGTAGAT CTTTTAGCGGATGCTGTAGCCGTTACTATGGGGCCAAAGGGAAGGACGGTGATAATTGAA CAGAGTTGGGGCAGTCCCAAAGTGACAAAAGATGGTGTGACTGTTGCAAAGTCCATTGAC TTAAAAGATAAATATAAAAATATTGGCGCTAAACTTGTGCAAGATGTTGCCAATAACACA AACGAAGAGGCTGGGGATGGCACCACTACTGCTACTGTATTGGCACGCTCTATTGCCAAG GAAGGCTTCGAGAAGATTAGCAAAGGTGCTAATCCAGTGGAAATCAGGAGAGGTGTGATG TTAGCTGTTGATGCTGTAATTGCTGAACTTAAGAAGCAGTCTAAACCTGTGACAACCCCT GAAGAGATTGCCCAGGTTGCTACAATTTCTGCAAATGGAGACAAAGAAATTGGCAACATC ATTTCTGATGCAATGAAGAAGGTTGGAAGAAAGGGCGTTATAACAGTAAAGGACGGAAAA ACACTGAATGATGAATTAGAAATTATAGAAGGCATGAAGTTTGATAGAGGTTATATTTCT CCATACTTTATTAATACATCAAAAGGTCAGAAATGTGAATTCCAAGATGCCTATGTTTTA TTGAGTGAAAAGAAAATTTCTAGTGTCCAGTCCATTGTTCCTGCTCTTGAAATTGCCAAT GCTCACCGTAAGCCCTTGGTCATAATTGCTGAAGATGTTGATGGAGAAGCTTTAAGTACA CTTGTTTTGAATAGGTTGAAAGTTGGTCTTCAGGTTGTAGCAGTCAAAGCTCCAGGTTTT GGTGACAATAGAAAGAACCAACTTAAAGACATGGCCATTGCTACTGGTGGTGCAGTATTT GGAGAAGAAGGACTGACCCTAAATCTTGAAGATGTTCAGCCTCATGACTTAGGGAAAGTT GGAGAGGTCATTGTGACCAAAGATGATGCCATGCTCTTGAAAGGAAAAGGTGACAAGGCT CAAATTGAAAAGCGTATTCAAGAAATCATTGAGCAGTTAGATGTCACAACTAGTGAATAT GAAAAGGAAAAACTGAATGAACGTCTGGCAAAACTCTCAGATGGTGTAGCTGTGCTGAAG GTTGGTGGGACTAGTGATGTTGAAGTGAATGAAAAGAAAGACAGAGTTACAGATGCCCTG AATGCGACAAGAGCTGCTGTTGAAGAAGGCATCGTTCTGGGAGGGGGCTGTGCCTTGCTT CGGTGCATTCCAGCCTTGGAGTCAATAACTCCAGCTAATGAAGATCAAAAAATTGGCTTA GAAATTATTAAAAAAGCACTCAAAATTCCTGCAATGACCATTGCTAAGAATGCAGGTGTT GAAGGATCATTGATAGTTGAGAAAATTTTGCAGAGTTCTCCAGAAGTTGGTTATGATGCT ATGCTTGGAGATTTTGTGAACATGGTGGAAAAAGGCATCATTGATCCAACTAAGGTTGTA AGAACTGCATTACTGGATGCTGCTGGAGTGGCCTCTCTTTTAACTACAGCAGAAGTTGTA GTCACAGAAATTCCTAAAGAAGAGAAGGATCCTGGAATGGGTGGAATGGGAGGAATGGGA GGTGGTATGGGAGGTGGCATGTTCTAATCCTAGATAGTGTTTTAACATTACTGATGAACT GTGAGAGGAAGCCCAAGGCGGCGTTCCTCACCAATAACTTCAAGAGAGGTGCAGTTGAAG GAGATGACTGAAGAAAAGGCTGGCTGACATTTATGAAAATCACTATAACCATCAGTTACT GATTTCAGTTGACGACATAGAATGGTTTACTGCTGTCATTGTCCATGCCTACAGATAATT TATTTTGTATTTTTGAATAAAGACATTTGTACATTCCTGATAAATGAGTACAAGAGCCAT GTACCAATGTACTGCTTTCAGCTTAAATCACTGAGGCATTTTTACTACTATTCTGTTAAA ATCAGGATTTTAGTGCTTGCCATCACCAGATGAGAAGTTAAGCAGCCTTTCTGTGGAGAG TAAGAATAATTGTGTACAGAGTAGAGAAATATCCAATTATGTGACCTTTGTGTAATAAAA ATTGTTTTAAAGTTAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACGGTCCGTCTCGCTGCCCGCACGCCGTGCCGCTGCCCCGCAGAAATGCTTCGATTACCC GCAGTCCTTCGTCAGATTAGGCCGGTGTCCAGGGCACTGGCTCCTCATCTCACTCGGGCT TATGCCAAAGATGTAAAATTTGGTGCAGATGCTCGAGCCTTAATGCTTCAAGGTGTAGAT CTTTTAGCGGATGCTGTAGCCGTTACTATGGGGCCAAAGGGAAGGACGGTGATAATTGAA CAGAGTTGGGGCAGTCCCAAAGTGACAAAAGATGGTGTGACTGTTGCAAAGTCCATTGAC TTAAAAGATAAATATAAAAATATTGGCGCTAAACTTGTGCAAGATGTTGCCAATAACACA AACGAAGAGGCTGGGGATGGCACCACTACTGCTACTGTATTGGCACGCTCTATTGCCAAG GAAGGCTTCGAGAAGATTAGCAAAGGTGCTAATCCAGTGGAAATCAGGAGAGGTGTGATG TTAGCTGTTGATGCTGTAATTGCTGAACTTAAGAAGCAGTCTAAACCTGTGACAACCCCT GAAGAGATTGCCCAGGTTGCTACAATTTCTGCAAATGGAGACAAAGAAATTGGCAACATC ATTTCTGATGCAATGAAGAAGGTTGGAAGAAAGGGCGTTATAACAGTAAAGGACGGAAAA ACACTGAATGATGAATTAGAAATTATAGAAGGCATGAAGTTTGATAGAGGTTATATTTCT CCATACTTTATTAATACATCAAAAGGTCAGAAATGTGAATTCCAAGATGCCTATGTTTTA TTGAGTGAAAAGAAAATTTCTAGTGTCCAGTCCATTGTTCCTGCTCTTGAAATTGCCAAT GCTCACCGTAAGCCCTTGGTCATAATTGCTGAAGATGTTGATGGAGAAGCTTTAAGTACA CTTGTTTTGAATAGGTTGAAAGTTGGTCTTCAGGTTGTAGCAGTCAAAGCTCCAGGTTTT GGTGACAATAGAAAGAACCAACTTAAAGACATGGCCATTGCTACTGGTGGTGCAGTATTT GGAGAAGAAGGACTGACCCTAAATCTTGAAGATGTTCAGCCTCATGACTTAGGGAAAGTT GGAGAGGTCATTGTGACCAAAGATGATGCCATGCTCTTGAAAGGAAAAGGTGACAAGGCT CAAATTGAAAAGCGTATTCAAGAAATCATTGAGCAGTTAGATGTCACAACTAGTGAATAT GAAAAGGAAAAACTGAATGAACGTCTGGCAAAACTCTCAGATGGTGTAGCTGTGCTGAAG GTTGGTGGGACTAGTGATGTTGAAGTGAATGAAAAGAAAGACAGAGTTACAGATGCCCTG AATGCGACAAGAGCTGCTGTTGAAGAAGGCATCGTTCTGGGAGGGGGCTGTGCCTTGCTT CGGTGCATTCCAGCCTTGGAGTCAATAACTCCAGCTAATGAAGATCAAAAAATTGGCTTA GAAATTATTAAAAAAGCACTCAAAATTCCTGCAATGACCATTGCTAAGAATGCAGGTGTT GAAGGATCATTGATAGTTGAGAAAATTTTGCAGAGTTCTCCAGAAGTTGGTTATGATGCT ATGCTTGGAGATTTTGTGAACATGGTGGAAAAAGGCATCATTGATCCAACTAAGGTTGTA AGAACTGCATTACTGGATGCTGCTGGAGTGGCCTCTCTTTTAACTACAGCAGAAGTTGTA GTCACAGAAATTCCTAAAGAAGAGAAGGATCCTGGAATGGGTGGAATGGGAGGAATGGGA GGTGGTATGGGAGGTGGCATGTTCTAATCCTAGATAGTGTTTTAACATTACTGATGAACT GTGAGAGGAAGCCCAAGGCGGCGTTCCTCACCAATAACTTCAAGAGAGGTGCAGTTGAAG GAGATGACTGAAGAAAAGGCTGGCTGACATTTATGAAAATCACTATAACCATCAGTTACT GATTTCAGTTGACGACATAGAATGGTTTACTGCTGTCATTGTCCATGCCTACAGATAATT TATTTTGTATTTTTGAATAAAGACATTTGTACATTCCTGATAAATGAGTACAAGAGCCAT GTACCAATGTACTGCTTTCAGCTTAAATCACTGAGGCATTTTTACTACTATTCTGTTAAA ATCAGGATTTTAGTGCTTGCCATCACCAGATGAGAAGTTAAGCAGCCTTTCTGTGGAGAG TAAGAATAATTGTGTACAGAGTAGAGAAATATCCAATTATGTGACCTTTGTGTAATAAAA ATTGTTTTAAAGTTAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 40-2164, + strand, RNAz p=0.726751 | |
| 1015-1134, + strand, RNAz p=0.766694 | |
| 1604-1762, - strand, RNAz p=0.957427 | |
| 1613-2154, - strand, RNAz p=0.931117 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 40-2164, + strand, RNAz p=0.726751 | |
| 1015-1134, + strand, RNAz p=0.766694 | |
| 1604-1762, - strand, RNAz p=0.957427 | |
| 1613-2154, - strand, RNAz p=0.931117 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 22-773, gnl|bosTau2|chr13 (39531551-39530814) | |
| 22-773, gnl|Hg17|chr20 (56105490-56106418) | |
| 22-773, gnl|Mm7|chr11 (41455465-41456217) | |
| 1015-1262, gnl|bosTau2|chr19 (28761122-28760875) | |
| 1015-1262, gnl|canFam2|chr37 (10012231-10012481) | |
| 1015-1262, gnl|dasNov1|scaffold_42248 (4481-4728) | |
| 1015-1262, gnl|echTel1|scaffold_293573 (6373-6123) | |
| 1015-1262, gnl|fr1|chrUn (190963748-190963499) | |
| 1015-1262, gnl|galGal2|chr7 (11080221-11080471) | |
| 1015-1262, gnl|hg17|chr2 (198179229-198179479) | |
| 1015-1262, gnl|Hg17|chr2 (198179477-198179230) | |
| 1015-1262, gnl|loxAfr1|scaffold_20494 (5267-5017) | |
| 1015-1262, gnl|mm7|chr1 (55327409-55327659) | |
| 1015-1262, gnl|Mm7|chr1 (55327657-55327410) | |
| 1015-1262, gnl|monDom2|scaffold_2 (107223753-107224003) | |
| 1015-1262, gnl|oryCun1|scaffold_185403 (652-902) | |
| 1015-1262, gnl|panTro1|chr13 (88131640-88131890) | |
| 1015-1262, gnl|rheMac2|chr12 (61106077-61106327) | |
| 1015-1262, gnl|rn3|chr9 (53888130-53888380) | |
| 1015-1262, gnl|tetNig1|chr2 (6908544-6908294) | |
| 1015-1262, gnl|xenTro1|scaffold_48 (2231437-2231187) | |
| 1604-2244, gnl|bosTau2|chr7 (41525017-41525663) | |
| 1604-2244, gnl|Hg17|chr5 (21920015-21920643) | |
| 1604-2244, gnl|Mm7|chr11 (41457048-41457674) | |
| 1613-2236, gnl|bosTau2|chr19 (28760031-28759402) | |
| 1613-2236, gnl|Hg17|chr2 (198177430-198176811) | |
| 1613-2236, gnl|Mm7|chr1 (55325752-55325140) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 22-773, gnl|bosTau2|chr13 (39531551-39530814) | |
| 22-773, gnl|Hg17|chr20 (56105490-56106418) | |
| 22-773, gnl|Mm7|chr11 (41455465-41456217) | |
| 1015-1262, gnl|bosTau2|chr19 (28761122-28760875) | |
| 1015-1262, gnl|canFam2|chr37 (10012231-10012481) | |
| 1015-1262, gnl|dasNov1|scaffold_42248 (4481-4728) | |
| 1015-1262, gnl|echTel1|scaffold_293573 (6373-6123) | |
| 1015-1262, gnl|fr1|chrUn (190963748-190963499) | |
| 1015-1262, gnl|galGal2|chr7 (11080221-11080471) | |
| 1015-1262, gnl|hg17|chr2 (198179229-198179479) | |
| 1015-1262, gnl|Hg17|chr2 (198179477-198179230) | |
| 1015-1262, gnl|loxAfr1|scaffold_20494 (5267-5017) | |
| 1015-1262, gnl|mm7|chr1 (55327409-55327659) | |
| 1015-1262, gnl|Mm7|chr1 (55327657-55327410) | |
| 1015-1262, gnl|monDom2|scaffold_2 (107223753-107224003) | |
| 1015-1262, gnl|oryCun1|scaffold_185403 (652-902) | |
| 1015-1262, gnl|panTro1|chr13 (88131640-88131890) | |
| 1015-1262, gnl|rheMac2|chr12 (61106077-61106327) | |
| 1015-1262, gnl|rn3|chr9 (53888130-53888380) | |
| 1015-1262, gnl|tetNig1|chr2 (6908544-6908294) | |
| 1015-1262, gnl|xenTro1|scaffold_48 (2231437-2231187) | |
| 1604-2244, gnl|bosTau2|chr7 (41525017-41525663) | |
| 1604-2244, gnl|Hg17|chr5 (21920015-21920643) | |
| 1604-2244, gnl|Mm7|chr11 (41457048-41457674) | |
| 1613-2236, gnl|bosTau2|chr19 (28760031-28759402) | |
| 1613-2236, gnl|Hg17|chr2 (198177430-198176811) | |
| 1613-2236, gnl|Mm7|chr1 (55325752-55325140) |
| Expressed library(ies): 64 entry(ies) | More info |
| Expressed library(ies): 64 entry(ies) | Help | Less info |
| sug (5.21894) | |
| cte (2.63466) | |
| hea (1.84049) | |
| lun (1.20391) | |
| spc (1.13366) | |
| mga (1.12144) | |
| rec (1.03842) | |
| kid (1.03788) | |
| mgp (0.922722) | |
| sme (0.91631) | |
| ova (0.903926) | |
| isp (0.902256) | |
| liv (0.877706) | |
| lyg (0.798616) | |
| fco (0.78604) | |
| bfe (0.749288) | |
| ldo (0.679018) | |
| vin (0.665115) | |
| nms (0.641574) | |
| tbr (0.616713) | |
| lin (0.582411) | |
| spl (0.572738) | |
| cmu (0.55918) | |
| sag (0.548145) | |
| ssp (0.542079) | |
| mgm (0.541028) | |
| sin (0.524843) | |
| pro (0.512033) | |
| fhi (0.508733) | |
| eje (0.494169) | |
| tra (0.492368) | |
| cbe (0.478469) | |
| fat (0.442282) | |
| ski (0.440205) | |
| ste (0.405625) | |
| elu (0.385356) | |
| bla (0.373042) | |
| mcp (0.341297) | |
| cut (0.339847) | |
| lnt (0.284616) | |
| hlv (0.278513) | |
| clu (0.239292) | |
| med (0.232504) | |
| cty (0.20816) | |
| tes (0.207814) | |
| fli (0.202881) | |
| nbm (0.198649) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| sto (0.179824) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| cki (0.165235) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| thg (0.126791) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| jej (0.0989218) |
| Expressed library(ies): 64 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sug (5.21894) | |
| cte (2.63466) | |
| hea (1.84049) | |
| lun (1.20391) | |
| spc (1.13366) | |
| mga (1.12144) | |
| rec (1.03842) | |
| kid (1.03788) | |
| mgp (0.922722) | |
| sme (0.91631) | |
| ova (0.903926) | |
| isp (0.902256) | |
| liv (0.877706) | |
| lyg (0.798616) | |
| fco (0.78604) | |
| bfe (0.749288) | |
| ldo (0.679018) | |
| vin (0.665115) | |
| nms (0.641574) | |
| tbr (0.616713) | |
| lin (0.582411) | |
| spl (0.572738) | |
| cmu (0.55918) | |
| sag (0.548145) | |
| ssp (0.542079) | |
| mgm (0.541028) | |
| sin (0.524843) | |
| pro (0.512033) | |
| fhi (0.508733) | |
| eje (0.494169) | |
| tra (0.492368) | |
| cbe (0.478469) | |
| fat (0.442282) | |
| ski (0.440205) | |
| ste (0.405625) | |
| elu (0.385356) | |
| bla (0.373042) | |
| mcp (0.341297) | |
| cut (0.339847) | |
| lnt (0.284616) | |
| hlv (0.278513) | |
| clu (0.239292) | |
| med (0.232504) | |
| cty (0.20816) | |
| tes (0.207814) | |
| fli (0.202881) | |
| nbm (0.198649) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| sto (0.179824) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| cki (0.165235) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| thg (0.126791) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| jej (0.0989218) |