Ss1.1-ruio32_g12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCTTCAGTTTCTCATGTATGAAAAGATGAGATAACACTCTCCTTTCAGGATTTTTATGA GGCTTAGAAATAGTGTACCTAAAATACTATAAACATAAAAGAAAAAGCAAAAATGTCACT ATCCTTATAATTGTTTGACACTGTTACACTAGGAAAAAAAAAAAAACTATGGATTTAATG TGTGCCGAAAGCTCAAGGAAAAAAATCCTCAGGCATTCCAGATTCTATCCTCCACCTTTG TAGACTTTACAGACATTGGAGTGGATTATTGTGATTTCTCCGTCCAATCCAAACACAAAA TTATAGAATTGGACGATAAAGGCCAAGTGGTTCGCATCAACTTCAATAATGCAACTCGAG ACACAATATTTGATGTACCTGTCGAAAAAGTTCAGCCTTTTTATGCTGCTCTGAAGGAGT TTGTTGACCTCATGAACTGCAAAGATTTCAAGTTTACTTTCAAGATGAATCCAGGTGATG TGATTACCTTTGATAACTGGCGGTTACTTCACGGCCGGCAGAGCTATGAAGCAGGAACTG AAATTTCCCGCCATCTAGAAGGAGCTTATGCCGACTGGGATGTGGTCATGTCAAGGCTTC GCATCTTAAGACAGAGTGTCCAGAATAGAAACTGAATCTCCTGTTTATACCTTCAGTAAG ATTCCAATAAATGTATTGTATAAGATGTGGCAAAGTTATTTGTCTTCACGGGCCATAAGC CATGTCACTTACATATTAATTTCTTTTAACATTGAACACATCCTCTTTCTCACAAGATTT CTCTTTTCTCTGTAATCATTTGCAGCGCCAGCTTTTTAGATGTTGTAGCCCTGCTCTCTC TTTTCCAAATAAAGCATCTCTTCTGTTCAATGGCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCTTCAGTTTCTCATGTATGAAAAGATGAGATAACACTCTCCTTTCAGGATTTTTATGA GGCTTAGAAATAGTGTACCTAAAATACTATAAACATAAAAGAAAAAGCAAAAATGTCACT ATCCTTATAATTGTTTGACACTGTTACACTAGGAAAAAAAAAAAAACTATGGATTTAATG TGTGCCGAAAGCTCAAGGAAAAAAATCCTCAGGCATTCCAGATTCTATCCTCCACCTTTG TAGACTTTACAGACATTGGAGTGGATTATTGTGATTTCTCCGTCCAATCCAAACACAAAA TTATAGAATTGGACGATAAAGGCCAAGTGGTTCGCATCAACTTCAATAATGCAACTCGAG ACACAATATTTGATGTACCTGTCGAAAAAGTTCAGCCTTTTTATGCTGCTCTGAAGGAGT TTGTTGACCTCATGAACTGCAAAGATTTCAAGTTTACTTTCAAGATGAATCCAGGTGATG TGATTACCTTTGATAACTGGCGGTTACTTCACGGCCGGCAGAGCTATGAAGCAGGAACTG AAATTTCCCGCCATCTAGAAGGAGCTTATGCCGACTGGGATGTGGTCATGTCAAGGCTTC GCATCTTAAGACAGAGTGTCCAGAATAGAAACTGAATCTCCTGTTTATACCTTCAGTAAG ATTCCAATAAATGTATTGTATAAGATGTGGCAAAGTTATTTGTCTTCACGGGCCATAAGC CATGTCACTTACATATTAATTTCTTTTAACATTGAACACATCCTCTTTCTCACAAGATTT CTCTTTTCTCTGTAATCATTTGCAGCGCCAGCTTTTTAGATGTTGTAGCCCTGCTCTCTC TTTTCCAAATAAAGCATCTCTTCTGTTCAATGGCCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 169-307, - strand, RNAz p=0.823443 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 169-307, - strand, RNAz p=0.823443 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 1-158, gnl|bosTau2|chr15 (36888247-36888093) | |
| 1-158, gnl|canFam2|chr21 (50957623-50957794) | |
| 1-158, gnl|dasNov1|scaffold_117382 (3893-3752) | |
| 1-158, gnl|echTel1|scaffold_234348 (7743-7592) | |
| 1-158, gnl|hg17|chr11 (27104604-27104794) | |
| 1-158, gnl|Hg17|chr11 (27104625-27104784) | |
| 1-158, gnl|loxAfr1|scaffold_1420 (123886-123710) | |
| 1-158, gnl|mm7|chr2 (110117451-110117289) | |
| 1-158, gnl|Mm7|chr2 (110117438-110117292) | |
| 1-158, gnl|oryCun1|scaffold_186594 (259-425) | |
| 1-158, gnl|panTro1|chr9 (27397783-27397973) | |
| 1-158, gnl|rheMac2|chr14 (44668091-44667900) | |
| 1-158, gnl|rn3|chr3 (95645776-95645618) | |
| 169-307, gnl|bosTau2|chr15 (36902641-36902503) | |
| 169-307, gnl|canFam2|chr21 (50950054-50950291) | |
| 169-307, gnl|danRer3|chr7 (23292496-23292699) | |
| 169-307, gnl|dasNov1|scaffold_134532 (5668-5906) | |
| 169-307, gnl|fr1|chrUn (94963438-94963229) | |
| 169-307, gnl|galGal2|chr3 (44975439-44975218) | |
| 169-307, gnl|hg17|chr11 (27097754-27097997) | |
| 169-307, gnl|Hg17|chr11 (27097830-27097968) | |
| 169-307, gnl|mm7|chr2 (110121011-110120778) | |
| 169-307, gnl|Mm7|chr2 (110120940-110120802) | |
| 169-307, gnl|monDom2|scaffold_10 (72454456-72454716) | |
| 169-307, gnl|oryCun1|scaffold_181068 (1412-1643) | |
| 169-307, gnl|panTro1|chr9 (27390941-27391184) | |
| 169-307, gnl|rheMac2|chr14 (44674222-44673979) | |
| 169-307, gnl|rn3|chr3 (95649485-95649251) | |
| 169-307, gnl|tetNig1|chr5 (11185745-11185539) | |
| 169-307, gnl|xenTro1|scaffold_389 (173175-172935) | |
| 470-869, gnl|bosTau2|chr15 (36887406-36887011) | |
| 470-869, gnl|Hg17|chr11 (27105411-27105795) | |
| 470-869, gnl|Mm7|chr2 (110116406-110116028) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-158, gnl|bosTau2|chr15 (36888247-36888093) | |
| 1-158, gnl|canFam2|chr21 (50957623-50957794) | |
| 1-158, gnl|dasNov1|scaffold_117382 (3893-3752) | |
| 1-158, gnl|echTel1|scaffold_234348 (7743-7592) | |
| 1-158, gnl|hg17|chr11 (27104604-27104794) | |
| 1-158, gnl|Hg17|chr11 (27104625-27104784) | |
| 1-158, gnl|loxAfr1|scaffold_1420 (123886-123710) | |
| 1-158, gnl|mm7|chr2 (110117451-110117289) | |
| 1-158, gnl|Mm7|chr2 (110117438-110117292) | |
| 1-158, gnl|oryCun1|scaffold_186594 (259-425) | |
| 1-158, gnl|panTro1|chr9 (27397783-27397973) | |
| 1-158, gnl|rheMac2|chr14 (44668091-44667900) | |
| 1-158, gnl|rn3|chr3 (95645776-95645618) | |
| 169-307, gnl|bosTau2|chr15 (36902641-36902503) | |
| 169-307, gnl|canFam2|chr21 (50950054-50950291) | |
| 169-307, gnl|danRer3|chr7 (23292496-23292699) | |
| 169-307, gnl|dasNov1|scaffold_134532 (5668-5906) | |
| 169-307, gnl|fr1|chrUn (94963438-94963229) | |
| 169-307, gnl|galGal2|chr3 (44975439-44975218) | |
| 169-307, gnl|hg17|chr11 (27097754-27097997) | |
| 169-307, gnl|Hg17|chr11 (27097830-27097968) | |
| 169-307, gnl|mm7|chr2 (110121011-110120778) | |
| 169-307, gnl|Mm7|chr2 (110120940-110120802) | |
| 169-307, gnl|monDom2|scaffold_10 (72454456-72454716) | |
| 169-307, gnl|oryCun1|scaffold_181068 (1412-1643) | |
| 169-307, gnl|panTro1|chr9 (27390941-27391184) | |
| 169-307, gnl|rheMac2|chr14 (44674222-44673979) | |
| 169-307, gnl|rn3|chr3 (95649485-95649251) | |
| 169-307, gnl|tetNig1|chr5 (11185745-11185539) | |
| 169-307, gnl|xenTro1|scaffold_389 (173175-172935) | |
| 470-869, gnl|bosTau2|chr15 (36887406-36887011) | |
| 470-869, gnl|Hg17|chr11 (27105411-27105795) | |
| 470-869, gnl|Mm7|chr2 (110116406-110116028) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| kid (0.778412) | |
| cmu (0.186393) | |
| lun (0.150489) |