Non-Coding RNA Search

Ss1.1-ruio32_h12.5

Sequence:


               
               ACTGGGGTGGTGGGGGTTGGGGGGGACAGGGAAGGAAGCTCAGAGAAGGGTTCTGTGCTC
ATGAGTCTTTAGAAAGCTTCAGATTTTCTAACCATTGTTCTGTTTGTGTGTTTGAGTTAA
TATTGCTGTGTATTAAAGAATAAACAAGTCCCAGTGTCCAAAGTATATTGAAAGTAGAAG
TAGTAAAATAATTCCTTTATAAATGCCCTTTTGTGGGTTTTTAGGAAGGGCTATGACTTC
TGGGAGTGTCTATGTTAATCCACCTTTTGTAGCTAGATGTAGTCCTGTAGTTAGTCACTG
AAATGCTGGAAGAGGGTTAAGAGGAAGGGTGAAGGGAAGGGCTCTTGGCTATTATCTCCA
TATCTAGACAGTTTTAGTTTATAACCATAGGTCTATATGTGCATTTTTGTAAAGTTTCTG
TTTATTGTGGACAAGGTTCATTCTTTATCTTGCAACATCTATGTCCCAGGATAACATATG
ATAAAAAGTAGAGTTAGTGAGTTAACCAATTTGTAAATAAATATCTTTGTTACAATGATA
TAAAACAGCATCTTGGACATGAATTGTTAAAGTCTCAGAAATGTATGTCAGGACTTGTTC
ACTAGGTTGGCAGCAGAGGGGCAGAAGGAAAGTATAAAGGGAGGGTTGTATGCGAATGTG
TTCATATTTATATTTTGGTGATAACCATTGATGTGGGTGCATCTTTTGGCTGTAATATAA
GCAATTCAGTGGAAACATACCTCCTTGCTAATATTTTAATAGTTTGGATAATTAGTCCTC
TTAGAGGCATTATACTTTATGTACTCTGTTGCTTTATGTGTCATTTTTAATTGAACATAA
GGGAATGTAGTATTTTAATCATAACTCTACCAATATCTTTATCTTGAAGCCTGTTGCTAT
TTTTGTCTTTTATGTAATTTTATCGCTAAGAAAGGCAGGATTACATTTTTTTTCCTTCCA
GATCGAGTTGGTGTAGTATATTCTTGGTTATCAAAATAAAATACTCATATAGCTTTGGGA
CTTTGAAATGGTAAATATTCATGATGTGTGAAAAAGCATGATACATAACTATGATCTTAA
TTACATAAAAATGGATGCTTCATTGTGTAGATACACAAACGAAATCTAGAAGGACATATC
AACCTGTAAACTGCTTGATTATGGATGACTTTGTTTTTTGCTTCCTATTTGCTTGTGTTT
TTCAGTTTCCTATTATGCACATGTTAACTTTTAAGAAATAAATTTTACTTAAAAAAGCAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGGGGTGGTGGGGGTTGGGGGGGACAGGGAAGGAAGCTCAGAGAAGGGTTCTGTGCTC
ATGAGTCTTTAGAAAGCTTCAGATTTTCTAACCATTGTTCTGTTTGTGTGTTTGAGTTAA
TATTGCTGTGTATTAAAGAATAAACAAGTCCCAGTGTCCAAAGTATATTGAAAGTAGAAG
TAGTAAAATAATTCCTTTATAAATGCCCTTTTGTGGGTTTTTAGGAAGGGCTATGACTTC
TGGGAGTGTCTATGTTAATCCACCTTTTGTAGCTAGATGTAGTCCTGTAGTTAGTCACTG
AAATGCTGGAAGAGGGTTAAGAGGAAGGGTGAAGGGAAGGGCTCTTGGCTATTATCTCCA
TATCTAGACAGTTTTAGTTTATAACCATAGGTCTATATGTGCATTTTTGTAAAGTTTCTG
TTTATTGTGGACAAGGTTCATTCTTTATCTTGCAACATCTATGTCCCAGGATAACATATG
ATAAAAAGTAGAGTTAGTGAGTTAACCAATTTGTAAATAAATATCTTTGTTACAATGATA
TAAAACAGCATCTTGGACATGAATTGTTAAAGTCTCAGAAATGTATGTCAGGACTTGTTC
ACTAGGTTGGCAGCAGAGGGGCAGAAGGAAAGTATAAAGGGAGGGTTGTATGCGAATGTG
TTCATATTTATATTTTGGTGATAACCATTGATGTGGGTGCATCTTTTGGCTGTAATATAA
GCAATTCAGTGGAAACATACCTCCTTGCTAATATTTTAATAGTTTGGATAATTAGTCCTC
TTAGAGGCATTATACTTTATGTACTCTGTTGCTTTATGTGTCATTTTTAATTGAACATAA
GGGAATGTAGTATTTTAATCATAACTCTACCAATATCTTTATCTTGAAGCCTGTTGCTAT
TTTTGTCTTTTATGTAATTTTATCGCTAAGAAAGGCAGGATTACATTTTTTTTCCTTCCA
GATCGAGTTGGTGTAGTATATTCTTGGTTATCAAAATAAAATACTCATATAGCTTTGGGA
CTTTGAAATGGTAAATATTCATGATGTGTGAAAAAGCATGATACATAACTATGATCTTAA
TTACATAAAAATGGATGCTTCATTGTGTAGATACACAAACGAAATCTAGAAGGACATATC
AACCTGTAAACTGCTTGATTATGGATGACTTTGTTTTTTGCTTCCTATTTGCTTGTGTTT
TTCAGTTTCCTATTATGCACATGTTAACTTTTAAGAAATAAATTTTACTTAAAAAAGCAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               5-463, gnl|bosTau2|chr28 (16232266-16232734)
               

               
               5-463, gnl|Hg17|chr9 (103844970-103845415)
               

               
               5-463, gnl|Mm7|chrX (86200699-86201106)
               


               
               851-1289, gnl|bosTau2|chr7 (8830663-8831080)
               

               
               851-1289, gnl|Hg17|chr14 (51674628-51675064)
               

               
               851-1289, gnl|Mm7|chr1 (149330064-149330448)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-463, gnl|bosTau2|chr28 (16232266-16232734)
               

               
               5-463, gnl|Hg17|chr9 (103844970-103845415)
               

               
               5-463, gnl|Mm7|chrX (86200699-86201106)
               


               
               851-1289, gnl|bosTau2|chr7 (8830663-8831080)
               

               
               851-1289, gnl|Hg17|chr14 (51674628-51675064)
               

               
               851-1289, gnl|Mm7|chr1 (149330064-149330448)

Expressed library(ies): 46 entry(ies)

More info

Expressed library(ies): 46 entry(ies)

Help | Less info


               
               tra (1.10783)
               

               
               fco (1.10046)
               

               
               tbr (1.07925)
               

               
               kid (0.908147)
               

               
               ret (0.7724)
               

               
               ldo (0.679018)
               

               
               hea (0.613497)
               

               
               lin (0.582411)
               

               
               ste (0.540833)
               

               
               nmm (0.531209)
               

               
               fhi (0.508733)
               

               
               amn (0.417711)
               

               
               tes (0.415628)
               

               
               pgl (0.35545)
               

               
               ebs (0.354904)
               

               
               sin (0.349895)
               

               
               jca (0.34188)
               

               
               vin (0.332557)
               

               
               lun (0.300978)
               

               
               bfe (0.299715)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               lyg (0.266205)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               bla (0.248694)
               

               
               pan (0.23596)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               nlu (0.191681)
               

               
               mgm (0.180343)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               cbr (0.127975)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 46 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (1.10783)
               

               
               fco (1.10046)
               

               
               tbr (1.07925)
               

               
               kid (0.908147)
               

               
               ret (0.7724)
               

               
               ldo (0.679018)
               

               
               hea (0.613497)
               

               
               lin (0.582411)
               

               
               ste (0.540833)
               

               
               nmm (0.531209)
               

               
               fhi (0.508733)
               

               
               amn (0.417711)
               

               
               tes (0.415628)
               

               
               pgl (0.35545)
               

               
               ebs (0.354904)
               

               
               sin (0.349895)
               

               
               jca (0.34188)
               

               
               vin (0.332557)
               

               
               lun (0.300978)
               

               
               bfe (0.299715)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               lyg (0.266205)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               bla (0.248694)
               

               
               pan (0.23596)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               nlu (0.191681)
               

               
               mgm (0.180343)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               cbr (0.127975)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	5-463, gnl\|bosTau2\|chr28 (16232266-16232734)
	5-463, gnl\|Hg17\|chr9 (103844970-103845415)
	5-463, gnl\|Mm7\|chrX (86200699-86201106)

	851-1289, gnl\|bosTau2\|chr7 (8830663-8831080)
	851-1289, gnl\|Hg17\|chr14 (51674628-51675064)
	851-1289, gnl\|Mm7\|chr1 (149330064-149330448)

	tra (1.10783)
	fco (1.10046)
	tbr (1.07925)
	kid (0.908147)
	ret (0.7724)
	ldo (0.679018)
	hea (0.613497)
	lin (0.582411)
	ste (0.540833)
	nmm (0.531209)
	fhi (0.508733)
	amn (0.417711)
	tes (0.415628)
	pgl (0.35545)
	ebs (0.354904)
	sin (0.349895)
	jca (0.34188)
	vin (0.332557)
	lun (0.300978)
	bfe (0.299715)
	cte (0.29274)
	liv (0.292569)
	spl (0.286369)
	hyp (0.285673)
	fce (0.271592)
	lyg (0.266205)
	ova (0.258264)
	sug (0.254582)
	bla (0.248694)
	pan (0.23596)
	mgp (0.230681)
	spc (0.226732)
	nlu (0.191681)
	mgm (0.180343)
	ill (0.175593)
	fbs (0.175346)
	eye (0.170503)
	nje (0.16592)
	mga (0.160205)
	fat (0.147427)
	ski (0.146735)
	nca (0.136874)
	pla (0.133672)
	cbr (0.127975)
	ecc (0.115035)
	eje (0.0988338)