Non-Coding RNA Search

Ss1.1-ruio32_h4.5

Sequence:


               
               AATGCCTTAAGACTGGAGAAAGCTTTCAGAGCCTGGGGGTCAGAGATGAACTGTGATACG
AATCCCTTGGAAGCTGGACTGGAATATTTTGTAAAGCTAAATAAGCCGGCAGACTTCATA
GGAAAGCAAGCACTGAAACAGATTAAAGCCAAGGGGCTGAAACGGAGACTGGTCTGCCTC
ACCTTGGCAACGGACGATGTTGATCCAGAGGGAAATGAAAGCATCTGGTATGACGGCAAG
GTGGTTGGCAACACCACGTCCGGAAGCTACAGTTACAGCATCCAGAAGAGTCTGGCTTTC
GCGTATGTCCCTGTAGAGCTGAGCAAAGTGGGACAACAAGTGGAAGTTGAACTATTGGGC
AAAAATTACCCAGCAACTGTCATCCAAGAGCCCTTGGTGTTGACAGAACCAACCAGAAAC
CGGCTTCAGAAAAAGGGTGGGAAGGACAAAATTTGAAAAGACTTTCAGCAGGCCAGTGAT
TTATGGCTGCTCTACGACTGTAATCAAAAATATAACTGATTCACAGAGGGAATAGGGGAA
ACCAAAAATTCAGTTCAACATCATCAAAATCTGGATTCAGAATCTAAATAAAACCTTTCT
CTTGTTTTCTAAATAAGATGGAATAATTGATGGGCTATTTATATCGTAGTTTCAAATGAT
GACATTTGAAGTAAATGGTTCTATTATCCTGTATTGTTTATGAAATTCAATCAGCAAAAT
GTTGTTTGCTAACATACAATCATTATTATAACCGAATTGGAAAGCATTATATAATTCTAG
AAACCTTTTCATATGGTTCTTGTTAGCTGAAAACTGAAGTTTTACAGAAAATTAAATGAA
TATTGTGGATGGATTTATTTCATTGAGAAATATTAATAGAATACGAGATCATTTTTTCAA
AATATATCTATAATGGAAATAGTGAAATTCCATATTGGTATAACATTTTTATTCAATTCC
CTGAAATATTTACTTTCTTAATGACTTCCCTGAAAGCACTTTTATGAGACGTCATAATTG
TCCTTTCAAAGGTTGTTTTAGAAGAGAAATTGCAAAAAAGATCAGAGTCTTCCAAAGGAA
GCAGTACTTGTAAACCTTCTGAGATGAAGCTGAAACATAAATAGATTGTGCCAGGACAAA
CACAGGTTGAATACTGAACACGTCTCTTTGGGAAAAATTAATGCAAGTTGACATCACATT
GTGCCATTCTGAATATCATTTCACAAGCATTTGACAAAGCAGGTCAGACAAGAGCTGAAG
AGCTGACAGGCTTGTCCTTAACACTGTGTACAGCAAAGGGGGAGAAAAGTCATTTGGAAA
TCATTCTTTGATAGCCTTTTGAAATTATTTGGGCTTAGTTGATTGAATAGATAAACTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGCCTTAAGACTGGAGAAAGCTTTCAGAGCCTGGGGGTCAGAGATGAACTGTGATACG
AATCCCTTGGAAGCTGGACTGGAATATTTTGTAAAGCTAAATAAGCCGGCAGACTTCATA
GGAAAGCAAGCACTGAAACAGATTAAAGCCAAGGGGCTGAAACGGAGACTGGTCTGCCTC
ACCTTGGCAACGGACGATGTTGATCCAGAGGGAAATGAAAGCATCTGGTATGACGGCAAG
GTGGTTGGCAACACCACGTCCGGAAGCTACAGTTACAGCATCCAGAAGAGTCTGGCTTTC
GCGTATGTCCCTGTAGAGCTGAGCAAAGTGGGACAACAAGTGGAAGTTGAACTATTGGGC
AAAAATTACCCAGCAACTGTCATCCAAGAGCCCTTGGTGTTGACAGAACCAACCAGAAAC
CGGCTTCAGAAAAAGGGTGGGAAGGACAAAATTTGAAAAGACTTTCAGCAGGCCAGTGAT
TTATGGCTGCTCTACGACTGTAATCAAAAATATAACTGATTCACAGAGGGAATAGGGGAA
ACCAAAAATTCAGTTCAACATCATCAAAATCTGGATTCAGAATCTAAATAAAACCTTTCT
CTTGTTTTCTAAATAAGATGGAATAATTGATGGGCTATTTATATCGTAGTTTCAAATGAT
GACATTTGAAGTAAATGGTTCTATTATCCTGTATTGTTTATGAAATTCAATCAGCAAAAT
GTTGTTTGCTAACATACAATCATTATTATAACCGAATTGGAAAGCATTATATAATTCTAG
AAACCTTTTCATATGGTTCTTGTTAGCTGAAAACTGAAGTTTTACAGAAAATTAAATGAA
TATTGTGGATGGATTTATTTCATTGAGAAATATTAATAGAATACGAGATCATTTTTTCAA
AATATATCTATAATGGAAATAGTGAAATTCCATATTGGTATAACATTTTTATTCAATTCC
CTGAAATATTTACTTTCTTAATGACTTCCCTGAAAGCACTTTTATGAGACGTCATAATTG
TCCTTTCAAAGGTTGTTTTAGAAGAGAAATTGCAAAAAAGATCAGAGTCTTCCAAAGGAA
GCAGTACTTGTAAACCTTCTGAGATGAAGCTGAAACATAAATAGATTGTGCCAGGACAAA
CACAGGTTGAATACTGAACACGTCTCTTTGGGAAAAATTAATGCAAGTTGACATCACATT
GTGCCATTCTGAATATCATTTCACAAGCATTTGACAAAGCAGGTCAGACAAGAGCTGAAG
AGCTGACAGGCTTGTCCTTAACACTGTGTACAGCAAAGGGGGAGAAAAGTCATTTGGAAA
TCATTCTTTGATAGCCTTTTGAAATTATTTGGGCTTAGTTGATTGAATAGATAAACTTTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61866816|ref|XP_616752.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61866816|ref|XP_616752.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               239-357, + strand, RNAz p=0.912871

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               239-357, + strand, RNAz p=0.912871

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               239-1368, gnl|bosTau2|chr10 (4100058-4098930)
               

               
               239-1368, gnl|Hg17|chr5 (78329878-78328708)
               

               
               239-1368, gnl|Mm7|chr13 (90815207-90816365)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               239-1368, gnl|bosTau2|chr10 (4100058-4098930)
               

               
               239-1368, gnl|Hg17|chr5 (78329878-78328708)
               

               
               239-1368, gnl|Mm7|chr13 (90815207-90816365)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               kid (2.98391)
               

               
               lun (0.451467)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (2.98391)
               

               
               lun (0.451467)

	239-1368, gnl\|bosTau2\|chr10 (4100058-4098930)
	239-1368, gnl\|Hg17\|chr5 (78329878-78328708)
	239-1368, gnl\|Mm7\|chr13 (90815207-90816365)