Non-Coding RNA Search

Ss1.1-ruio32_j10.5

Sequence:


               
               GTTACTGGCTGTCATTTTCCATGGTGATGATTTTGTTTATTGCTTTTATAACCTCTTGGT
CAAAAGTTATTAGCTTGGTACAGGCTATTAGGATAACTTCCTATATGAATGAGACAATCC
TGTATTTTCCCTTTTCATCCCACTCTAGTTATACTCTAAGCTCTAAAAAAGCACTTTTGC
CCAAGTTTATTATCTGTTTTCTTGGTACCTGGTTACCATTTGTACTACTTCAAGTAATTA
TCCTTTTACTTAAAGTACAGATTCCAGCATACATTGAAATGAACATTCCATGGTTGTACT
TTGTCAATAGTTTTCTCATTGCTATAGTTTATTGGTTTAATTGTCACAAACTTAATTTTA
GACACATGGCGTTACCTGTGGATCCATTTGTCAACTGGAAATGCTGCTTCATTCCACTTA
CACTTCATAATCTGGAGCAAACTGAAAAGTCTCTATCAATAATAACTTGCTGATATGTTG
CCATGTTAACACTAAAATTTATAGCTATGAGAATCATAATTTCACAAACAGGAAAGAATG
ATTGGGACATATAAAGAATGAACTGAACTGAATTTTCCCCCATCCTCCCCCAAACTTCTG
TATCTTTTAATGTGTTTTTGGGGGGCTATGAGATTATTTATTAGGTGTTTGTTTTTAAAT
AAAATACTTGCAAGAAAAAAAAAATTATACTGGTTGGCCATACTGATGTTTGTGTTACCC
AGAAAACTATTGGATACAGATTGCTATGTAAATCTGAGACTGACCACCAACTTTTCAGAT
ATGAGCTTAAATAAAGATTTTTATTAAACTCAGAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTACTGGCTGTCATTTTCCATGGTGATGATTTTGTTTATTGCTTTTATAACCTCTTGGT
CAAAAGTTATTAGCTTGGTACAGGCTATTAGGATAACTTCCTATATGAATGAGACAATCC
TGTATTTTCCCTTTTCATCCCACTCTAGTTATACTCTAAGCTCTAAAAAAGCACTTTTGC
CCAAGTTTATTATCTGTTTTCTTGGTACCTGGTTACCATTTGTACTACTTCAAGTAATTA
TCCTTTTACTTAAAGTACAGATTCCAGCATACATTGAAATGAACATTCCATGGTTGTACT
TTGTCAATAGTTTTCTCATTGCTATAGTTTATTGGTTTAATTGTCACAAACTTAATTTTA
GACACATGGCGTTACCTGTGGATCCATTTGTCAACTGGAAATGCTGCTTCATTCCACTTA
CACTTCATAATCTGGAGCAAACTGAAAAGTCTCTATCAATAATAACTTGCTGATATGTTG
CCATGTTAACACTAAAATTTATAGCTATGAGAATCATAATTTCACAAACAGGAAAGAATG
ATTGGGACATATAAAGAATGAACTGAACTGAATTTTCCCCCATCCTCCCCCAAACTTCTG
TATCTTTTAATGTGTTTTTGGGGGGCTATGAGATTATTTATTAGGTGTTTGTTTTTAAAT
AAAATACTTGCAAGAAAAAAAAAATTATACTGGTTGGCCATACTGATGTTTGTGTTACCC
AGAAAACTATTGGATACAGATTGCTATGTAAATCTGAGACTGACCACCAACTTTTCAGAT
ATGAGCTTAAATAAAGATTTTTATTAAACTCAGAAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61855340|ref|XP_587422.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61855340|ref|XP_587422.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-814, gnl|bosTau2|chr1 (62901389-62900609)
               

               
               1-814, gnl|Hg17|chr3 (171285007-171285878)
               

               
               1-814, gnl|Mm7|chr3 (30708331-30709141)
               


               
               3-367, gnl|bosTau2|chr11 (34401802-34402164)
               

               
               3-367, gnl|Hg17|chr2 (85825441-85824796)
               

               
               3-367, gnl|Mm7|chr3 (30708333-30708696)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-814, gnl|bosTau2|chr1 (62901389-62900609)
               

               
               1-814, gnl|Hg17|chr3 (171285007-171285878)
               

               
               1-814, gnl|Mm7|chr3 (30708331-30709141)
               


               
               3-367, gnl|bosTau2|chr11 (34401802-34402164)
               

               
               3-367, gnl|Hg17|chr2 (85825441-85824796)
               

               
               3-367, gnl|Mm7|chr3 (30708333-30708696)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               lin (0.291206)
               

               
               kid (0.259471)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               jej (0.0989218)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.291206)
               

               
               kid (0.259471)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               jej (0.0989218)

	1-814, gnl\|bosTau2\|chr1 (62901389-62900609)
	1-814, gnl\|Hg17\|chr3 (171285007-171285878)
	1-814, gnl\|Mm7\|chr3 (30708331-30709141)

	3-367, gnl\|bosTau2\|chr11 (34401802-34402164)
	3-367, gnl\|Hg17\|chr2 (85825441-85824796)
	3-367, gnl\|Mm7\|chr3 (30708333-30708696)

	lin (0.291206)
	kid (0.259471)
	rec (0.17307)
	mga (0.160205)
	jej (0.0989218)