Non-Coding RNA Search

Ss1.1-ruio32_j16.5

Sequence:


               
               AAAATTATGGCTGTACTATTGCTTAAACAAAACTGGAACTGTTGTTGAATCCATAGCCAA
TACATTTACAGCAAATCTGTGTACTGAACATAATAGATTGACATCTAATTCAAGATGACA
ACATCTGTTACATTCTAAATGTGTTCAGGCTTCTGAAGGTAAAGGGACACTGGATCCAGA
AGCTATGGAACCAGCAGTTGATTCTTGTATTCCTGATTAACCTACTTGTAGACTTGAAAG
CAAGACCTTGATTGCACCACCAGGTCCAAAATACGAGCACGAGTGAAGCAGAACTCTCAC
GCATGACCTGAAGCGAACAGGCTGGTGTCTAACAGGTGCCTAGTTTTGAGATTATGCTGC
CTTAATGTAACACAGTCTGGCAGTTGCTAAATTTGTGTTCCCATTTTTAAATTGACCAAT
TTTACGGTGTTATACATTTGAGCGGTTGAATTGGGAGAATGAAGATAAGGAATTTACCTG
TCCAGGATCAAAGAAGCCTAGAAAAGAAGCAGTAATCTACCTCTGCCAATAACCCTGTTC
AAAAGAAACTCCGCAGAACACCACATTACTTTTTATTGGTCAGTCCCCTGGGGCTGACTA
GGTCAACTTTTTCCGAACAAAAGCAGGTTTTTATATGTCAACAGTGACAAAAGAAAGGCT
TAACACTCTGTGAATGTGAATGGAAACTCGGGAATATCCGTTTTTATAAACCACAAAGTT
TTTTGTTGTTAATCAGGAAATGCATGTTTATTTTGTAACCAAATGTCAGGCCTGTGGATG
ATTTTGAACTTCCTAGTTCATAAAGGTTTACAGTGAGCAAAAGGAGACCGTCCTGAGCCC
AGCAATATCAGGAGGAATTCAGTAGTTGCTGCCATTAGGAACATGAGGTGAAGATACAGG
GGTCAGGCCATTTTTTTCTGTGCTGGTTGCCACATCTCAGCAAGCACCAAAAACGAAAGC
AGTTTTTAAACCGCTATTTACATAAAGGAAATCATAAAATCCAATGCTTCTGCATACTGT
GTTATGTTACAGTCCAGTTTTGTGTGCTTTACTACACGGTTTGGTTACAGGACTTCTGTG
CATTGTAAACATAAACAGCATGGAAAAGGTTAAATACCTGTGTGCAGATTGTAAGATCTG
GTCCGGACTTGCTGTGTATATTGTAACGTTAAATGAAAAAGACTCCCCTTTGTATTATAG
TCATGCGGTCTTATGTATGATAAACAGTTGAATAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAATTATGGCTGTACTATTGCTTAAACAAAACTGGAACTGTTGTTGAATCCATAGCCAA
TACATTTACAGCAAATCTGTGTACTGAACATAATAGATTGACATCTAATTCAAGATGACA
ACATCTGTTACATTCTAAATGTGTTCAGGCTTCTGAAGGTAAAGGGACACTGGATCCAGA
AGCTATGGAACCAGCAGTTGATTCTTGTATTCCTGATTAACCTACTTGTAGACTTGAAAG
CAAGACCTTGATTGCACCACCAGGTCCAAAATACGAGCACGAGTGAAGCAGAACTCTCAC
GCATGACCTGAAGCGAACAGGCTGGTGTCTAACAGGTGCCTAGTTTTGAGATTATGCTGC
CTTAATGTAACACAGTCTGGCAGTTGCTAAATTTGTGTTCCCATTTTTAAATTGACCAAT
TTTACGGTGTTATACATTTGAGCGGTTGAATTGGGAGAATGAAGATAAGGAATTTACCTG
TCCAGGATCAAAGAAGCCTAGAAAAGAAGCAGTAATCTACCTCTGCCAATAACCCTGTTC
AAAAGAAACTCCGCAGAACACCACATTACTTTTTATTGGTCAGTCCCCTGGGGCTGACTA
GGTCAACTTTTTCCGAACAAAAGCAGGTTTTTATATGTCAACAGTGACAAAAGAAAGGCT
TAACACTCTGTGAATGTGAATGGAAACTCGGGAATATCCGTTTTTATAAACCACAAAGTT
TTTTGTTGTTAATCAGGAAATGCATGTTTATTTTGTAACCAAATGTCAGGCCTGTGGATG
ATTTTGAACTTCCTAGTTCATAAAGGTTTACAGTGAGCAAAAGGAGACCGTCCTGAGCCC
AGCAATATCAGGAGGAATTCAGTAGTTGCTGCCATTAGGAACATGAGGTGAAGATACAGG
GGTCAGGCCATTTTTTTCTGTGCTGGTTGCCACATCTCAGCAAGCACCAAAAACGAAAGC
AGTTTTTAAACCGCTATTTACATAAAGGAAATCATAAAATCCAATGCTTCTGCATACTGT
GTTATGTTACAGTCCAGTTTTGTGTGCTTTACTACACGGTTTGGTTACAGGACTTCTGTG
CATTGTAAACATAAACAGCATGGAAAAGGTTAAATACCTGTGTGCAGATTGTAAGATCTG
GTCCGGACTTGCTGTGTATATTGTAACGTTAAATGAAAAAGACTCCCCTTTGTATTATAG
TCATGCGGTCTTATGTATGATAAACAGTTGAATAAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               40-159, - strand, RNAz p=0.576979
               

               
               938-1096, - strand, RNAz p=0.73453

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.576979
               

               
               938-1096, - strand, RNAz p=0.73453

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1236, gnl|bosTau2|chr1 (100344476-100345728)
               

               
               1-1236, gnl|Hg17|chr21 (37808095-37809342)
               

               
               1-1236, gnl|Mm7|chr16 (94999522-95000790)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1236, gnl|bosTau2|chr1 (100344476-100345728)
               

               
               1-1236, gnl|Hg17|chr21 (37808095-37809342)
               

               
               1-1236, gnl|Mm7|chr16 (94999522-95000790)

Expressed library(ies): 31 entry(ies)

More info

Expressed library(ies): 31 entry(ies)

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               kid (0.259471)
               

               
               ova (0.258264)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

Expressed library(ies): 31 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.259471)
               

               
               ova (0.258264)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

	40-159, - strand, RNAz p=0.576979
	938-1096, - strand, RNAz p=0.73453

	1-1236, gnl\|bosTau2\|chr1 (100344476-100345728)
	1-1236, gnl\|Hg17\|chr21 (37808095-37809342)
	1-1236, gnl\|Mm7\|chr16 (94999522-95000790)

	kid (0.259471)
	ova (0.258264)
	thg (0.253582)
	tra (0.246184)
	pgl (0.236967)
	mgp (0.230681)
	mas (0.210305)
	hea (0.204499)
	jej (0.197844)
	cmu (0.186393)
	fty (0.17584)
	ill (0.175593)
	fbs (0.175346)
	sin (0.174948)
	eye (0.170503)
	fco (0.157208)
	lun (0.150489)
	isp (0.150376)
	fat (0.147427)
	liv (0.146284)
	spl (0.143184)
	csk (0.140746)
	ste (0.135208)
	ute (0.132784)
	sug (0.127291)
	bla (0.124347)
	ebs (0.118301)
	med (0.116252)
	ecc (0.115035)
	spc (0.113366)
	nbm (0.0993246)