Non-Coding RNA Search

Ss1.1-ruio32_j23.5

Sequence:


               
               AAATTAAAAACTCAAATCTCCACTGTCTGAAATCCCTTTCAGTTTTTTCAGATTGCATTG
ACTGTCCTATTAATTTTTCATATCCTATGTTGAATTACTTTTGCTATCATAAATAAGCTC
TATGTCCCCATTTCATTTTTTTTTTTAAATTTATGTGTGGTGGGTTTGTTTCAGATCTGG
CTTTTGTTACCATTTTTTGTGCTCTTTTTTAATCTTTTCAATCTGGCCTTCTGCTCTTTG
ACCTTTTGCAAGGTACTTCATCGACTGCTCTCTTGTTATAGGTTATGGATCATTGTCAGA
ATTTGATTGGAGGGGTTTAACGAGATTGTGTCTGTTTTAAATCAGTTTGGTTTTGAGAAG
GACCAAATTATATGAATGTCTTACAATGAAATTTACTTGTTACTGATTTTTTTTTGTTCT
ACCATACCACTATTTTTTGAGGATTTTGCACAGTGTAAAATGACATAATCATAGATTGCT
ATGGTTTAGGCTGTATATACAGTAAAAACTATGGGTTTTAAATGTTTGGGGAAATTCCTA
TGGAAAAAAGAGAGAGACATGTAGAAGAACCTCTAACAAGGTTAATGTGCATGCCCAAGG
TCTTTTGAGATTTCAGTGTGTAAATTTCCTTTTAGCTTACACAAAAATAAAATACTTTAA
AAGAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATTAAAAACTCAAATCTCCACTGTCTGAAATCCCTTTCAGTTTTTTCAGATTGCATTG
ACTGTCCTATTAATTTTTCATATCCTATGTTGAATTACTTTTGCTATCATAAATAAGCTC
TATGTCCCCATTTCATTTTTTTTTTTAAATTTATGTGTGGTGGGTTTGTTTCAGATCTGG
CTTTTGTTACCATTTTTTGTGCTCTTTTTTAATCTTTTCAATCTGGCCTTCTGCTCTTTG
ACCTTTTGCAAGGTACTTCATCGACTGCTCTCTTGTTATAGGTTATGGATCATTGTCAGA
ATTTGATTGGAGGGGTTTAACGAGATTGTGTCTGTTTTAAATCAGTTTGGTTTTGAGAAG
GACCAAATTATATGAATGTCTTACAATGAAATTTACTTGTTACTGATTTTTTTTTGTTCT
ACCATACCACTATTTTTTGAGGATTTTGCACAGTGTAAAATGACATAATCATAGATTGCT
ATGGTTTAGGCTGTATATACAGTAAAAACTATGGGTTTTAAATGTTTGGGGAAATTCCTA
TGGAAAAAAGAGAGAGACATGTAGAAGAACCTCTAACAAGGTTAATGTGCATGCCCAAGG
TCTTTTGAGATTTCAGTGTGTAAATTTCCTTTTAGCTTACACAAAAATAAAATACTTTAA
AAGAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               471-622, - strand, RNAz p=0.892264

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               471-622, - strand, RNAz p=0.892264

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-666, gnl|bosTau2|chr11 (45463501-45464171)
               

               
               1-666, gnl|Hg17|chr2 (64731144-64731790)
               

               
               1-666, gnl|Mm7|chr11 (20637737-20637093)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-666, gnl|bosTau2|chr11 (45463501-45464171)
               

               
               1-666, gnl|Hg17|chr2 (64731144-64731790)
               

               
               1-666, gnl|Mm7|chr11 (20637737-20637093)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               kid (0.259471)
               

               
               sug (0.254582)
               

               
               fcc (0.197785)
               

               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.259471)
               

               
               sug (0.254582)
               

               
               fcc (0.197785)
               

               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)

	1-666, gnl\|bosTau2\|chr11 (45463501-45464171)
	1-666, gnl\|Hg17\|chr2 (64731144-64731790)
	1-666, gnl\|Mm7\|chr11 (20637737-20637093)

	kid (0.259471)
	sug (0.254582)
	fcc (0.197785)
	mgm (0.180343)
	rec (0.17307)
	fhi (0.169578)
	mga (0.160205)
	pty (0.142714)
	ste (0.135208)
	pla (0.133672)
	nmm (0.132802)