Ss1.1-ruio32_k20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAAGAAGCAGCACAGCATTTTGTCTTGGATAACTTTTAGTGGGGAGGCTCCAACAACTT AGCAGCCAGCCTCCTTTCAGCATTCTGCACCCTCAGACACCTAGGGCCTTTGGGAAACAG ATTCCTAAAAGTGTAGTGAGCACACCCAATTTTCAGGACAGGATTTGGTCATCTGCTTCT GCAGTGAGGGCTCAGCTTTTATTAGATGAAAAGATCTGTCTGTATATACTAAGGAGGAAA TCCGGCAAAAGCATTGGCTTTCCTGAAATATTGGAAAAAGAGGTGGGCCAGCCATGAGAG GGTACCTTGTAGCCATATTCCTGAGTGCTGTCTTCCTCTATTATGTGCTGCATTGTATAT TGTGGGGAACAAATGTCTATTGGGTACCACCTGTGGAAATGAAGCGGAGAAATAAGATCC AGCCTTGTTTATCAAAGCCAGCTTTTGCCTCTCTCTTGAGGTTCGATCAGTTTCACCCTT TTCTCTGTGCAGCAGATTTTAAAAATATTGCTTCCTTCTATGGCAGCGATAAGTTTGATT TGCCCTATGGGATAAGAACATCAGCCTCATATTTTCGACTTGCTCTTTCAAAACTGCAGA GTTGTGATCTCTTTGATGAGTTTGACAATGTGCCATGTAAGAAGTGCGTGGTGGTTGGTA ATGGAGGAGTTTTGAAGAATAAGACATTGGGAGAGAAAATTGACTCCTATGATGTAATAA TAAGAATGAATAATGGTCCTATTTTAGGACATGAAGAGGATGTTGGGAGAAGGACTACCT TCCGACTTTTTTATCCAGAATCTGTTTTTTCAGATCCCAGTCACAATGATCCTAATACTA CAGTGATTCTCACTGCTTTTAAGCCTCTTGATTTAAAGTGGCTGTGGGAATTGTTGACAG GTGGAAAAATCAACACTAATGGTTTTTGGAAGAAACCAGCCTTAAATCTGATCTATAAGC CTTATCAAATCAGAATATTAGATCCTTTCATCATCAGAACAGCAGCTTACGAACTACTTC ACTTCCCAAAGGTGTTTCCAAAAAATCAGAAACCCAAACACCCAACAACAGGAATTATTG CCATTACACTGGCATTTCACATATGTCATGAAGTTCACATTGCTGGTTTTAAGTACAACT TTTCTGACCTCAAGAGTCCTTTGCACTACTATGGGAATGCCACCATGTCTTTGATGAATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAAGAAGCAGCACAGCATTTTGTCTTGGATAACTTTTAGTGGGGAGGCTCCAACAACTT AGCAGCCAGCCTCCTTTCAGCATTCTGCACCCTCAGACACCTAGGGCCTTTGGGAAACAG ATTCCTAAAAGTGTAGTGAGCACACCCAATTTTCAGGACAGGATTTGGTCATCTGCTTCT GCAGTGAGGGCTCAGCTTTTATTAGATGAAAAGATCTGTCTGTATATACTAAGGAGGAAA TCCGGCAAAAGCATTGGCTTTCCTGAAATATTGGAAAAAGAGGTGGGCCAGCCATGAGAG GGTACCTTGTAGCCATATTCCTGAGTGCTGTCTTCCTCTATTATGTGCTGCATTGTATAT TGTGGGGAACAAATGTCTATTGGGTACCACCTGTGGAAATGAAGCGGAGAAATAAGATCC AGCCTTGTTTATCAAAGCCAGCTTTTGCCTCTCTCTTGAGGTTCGATCAGTTTCACCCTT TTCTCTGTGCAGCAGATTTTAAAAATATTGCTTCCTTCTATGGCAGCGATAAGTTTGATT TGCCCTATGGGATAAGAACATCAGCCTCATATTTTCGACTTGCTCTTTCAAAACTGCAGA GTTGTGATCTCTTTGATGAGTTTGACAATGTGCCATGTAAGAAGTGCGTGGTGGTTGGTA ATGGAGGAGTTTTGAAGAATAAGACATTGGGAGAGAAAATTGACTCCTATGATGTAATAA TAAGAATGAATAATGGTCCTATTTTAGGACATGAAGAGGATGTTGGGAGAAGGACTACCT TCCGACTTTTTTATCCAGAATCTGTTTTTTCAGATCCCAGTCACAATGATCCTAATACTA CAGTGATTCTCACTGCTTTTAAGCCTCTTGATTTAAAGTGGCTGTGGGAATTGTTGACAG GTGGAAAAATCAACACTAATGGTTTTTGGAAGAAACCAGCCTTAAATCTGATCTATAAGC CTTATCAAATCAGAATATTAGATCCTTTCATCATCAGAACAGCAGCTTACGAACTACTTC ACTTCCCAAAGGTGTTTCCAAAAAATCAGAAACCCAAACACCCAACAACAGGAATTATTG CCATTACACTGGCATTTCACATATGTCATGAAGTTCACATTGCTGGTTTTAAGTACAACT TTTCTGACCTCAAGAGTCCTTTGCACTACTATGGGAATGCCACCATGTCTTTGATGAATA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 441-560, - strand, RNAz p=0.666896 | |
| 723-910, + strand, RNAz p=0.989989 | |
| 768-887, - strand, RNAz p=0.792032 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 441-560, - strand, RNAz p=0.666896 | |
| 723-910, + strand, RNAz p=0.989989 | |
| 768-887, - strand, RNAz p=0.792032 |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 281-386, gnl|bosTau2|chr1 (22599862-22599966) | |
| 281-386, gnl|canFam2|chr33 (8575766-8575982) | |
| 281-386, gnl|echTel1|scaffold_312755 (9736-9951) | |
| 281-386, gnl|hg17|chr3 (99969879-99970081) | |
| 281-386, gnl|Hg17|chr3 (99969962-99970066) | |
| 281-386, gnl|loxAfr1|scaffold_27051 (436-220) | |
| 281-386, gnl|mm7|chr16 (58430013-58429820) | |
| 281-386, gnl|Mm7|chr16 (58429939-58429835) | |
| 281-386, gnl|monDom2|scaffold_50 (12289724-12289475) | |
| 281-386, gnl|oryCun1|scaffold_200743 (98130-98327) | |
| 281-386, gnl|panTro1|chr2 (101169978-101170180) | |
| 281-386, gnl|rheMac2|chr2 (18963063-18963265) | |
| 281-386, gnl|rn3|chr11 (42965375-42965568) | |
| 434-564, gnl|bosTau2|chr1 (22609127-22609258) | |
| 434-564, gnl|canFam2|chr33 (8580573-8581132) | |
| 434-564, gnl|echTel1|scaffold_312755 (18616-19122) | |
| 434-564, gnl|hg17|chr3 (99974035-99974555) | |
| 434-564, gnl|Hg17|chr3 (99974319-99974450) | |
| 434-564, gnl|loxAfr1|scaffold_43551 (44930-44413) | |
| 434-564, gnl|mm7|chr16 (58422900-58422441) | |
| 434-564, gnl|Mm7|chr16 (58422684-58422553) | |
| 434-564, gnl|monDom2|scaffold_50 (12280868-12280331) | |
| 434-564, gnl|oryCun1|scaffold_200743 (105210-105697) | |
| 434-564, gnl|panTro1|chr2 (101174161-101174681) | |
| 434-564, gnl|rheMac2|chr2 (18967828-18968282) | |
| 434-564, gnl|rn3|chr11 (42972873-42973265) | |
| 723-910, gnl|bosTau2|chr1 (22636002-22636189) | |
| 723-910, gnl|canFam2|chr33 (8591100-8591342) | |
| 723-910, gnl|dasNov1|scaffold_18006 (38858-38616) | |
| 723-910, gnl|galGal2|chr1 (78330568-78330809) | |
| 723-910, gnl|hg17|chr3 (99989548-99989792) | |
| 723-910, gnl|Hg17|chr3 (99989568-99989755) | |
| 723-910, gnl|loxAfr1|scaffold_43551 (19576-19332) | |
| 723-910, gnl|mm7|chr16 (58410018-58409779) | |
| 723-910, gnl|Mm7|chr16 (58410000-58409813) | |
| 723-910, gnl|monDom2|scaffold_50 (12251077-12250841) | |
| 723-910, gnl|oryCun1|scaffold_175848 (3449-3209) | |
| 723-910, gnl|panTro1|chr2 (101189677-101189921) | |
| 723-910, gnl|rheMac2|chr2 (18983207-18983451) | |
| 723-910, gnl|rn3|chr11 (42990854-42991093) | |
| 723-910, gnl|xenTro1|scaffold_116 (1156191-1156440) | |
| 1047-1197, gnl|bosTau2|chr1 (22640506-22640656) | |
| 1047-1197, gnl|canFam2|chr33 (8594859-8595023) | |
| 1047-1197, gnl|dasNov1|scaffold_18006 (35416-35245) | |
| 1047-1197, gnl|echTel1|scaffold_312755 (57958-58129) | |
| 1047-1197, gnl|galGal2|chr1 (78335481-78335661) | |
| 1047-1197, gnl|hg17|chr3 (99993368-99993549) | |
| 1047-1197, gnl|Hg17|chr3 (99993372-99993522) | |
| 1047-1197, gnl|loxAfr1|scaffold_43551 (15635-15453) | |
| 1047-1197, gnl|mm7|chr16 (58408626-58408452) | |
| 1047-1197, gnl|Mm7|chr16 (58408623-58408474) | |
| 1047-1197, gnl|monDom2|scaffold_50 (12247308-12247144) | |
| 1047-1197, gnl|oryCun1|scaffold_96488 (3646-3465) | |
| 1047-1197, gnl|panTro1|chr2 (101193497-101193678) | |
| 1047-1197, gnl|rheMac2|chr2 (18987305-18987481) | |
| 1047-1197, gnl|rn3|chr11 (42992462-42992634) | |
| 1047-1197, gnl|xenTro1|scaffold_116 (1158703-1158884) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 281-386, gnl|bosTau2|chr1 (22599862-22599966) | |
| 281-386, gnl|canFam2|chr33 (8575766-8575982) | |
| 281-386, gnl|echTel1|scaffold_312755 (9736-9951) | |
| 281-386, gnl|hg17|chr3 (99969879-99970081) | |
| 281-386, gnl|Hg17|chr3 (99969962-99970066) | |
| 281-386, gnl|loxAfr1|scaffold_27051 (436-220) | |
| 281-386, gnl|mm7|chr16 (58430013-58429820) | |
| 281-386, gnl|Mm7|chr16 (58429939-58429835) | |
| 281-386, gnl|monDom2|scaffold_50 (12289724-12289475) | |
| 281-386, gnl|oryCun1|scaffold_200743 (98130-98327) | |
| 281-386, gnl|panTro1|chr2 (101169978-101170180) | |
| 281-386, gnl|rheMac2|chr2 (18963063-18963265) | |
| 281-386, gnl|rn3|chr11 (42965375-42965568) | |
| 434-564, gnl|bosTau2|chr1 (22609127-22609258) | |
| 434-564, gnl|canFam2|chr33 (8580573-8581132) | |
| 434-564, gnl|echTel1|scaffold_312755 (18616-19122) | |
| 434-564, gnl|hg17|chr3 (99974035-99974555) | |
| 434-564, gnl|Hg17|chr3 (99974319-99974450) | |
| 434-564, gnl|loxAfr1|scaffold_43551 (44930-44413) | |
| 434-564, gnl|mm7|chr16 (58422900-58422441) | |
| 434-564, gnl|Mm7|chr16 (58422684-58422553) | |
| 434-564, gnl|monDom2|scaffold_50 (12280868-12280331) | |
| 434-564, gnl|oryCun1|scaffold_200743 (105210-105697) | |
| 434-564, gnl|panTro1|chr2 (101174161-101174681) | |
| 434-564, gnl|rheMac2|chr2 (18967828-18968282) | |
| 434-564, gnl|rn3|chr11 (42972873-42973265) | |
| 723-910, gnl|bosTau2|chr1 (22636002-22636189) | |
| 723-910, gnl|canFam2|chr33 (8591100-8591342) | |
| 723-910, gnl|dasNov1|scaffold_18006 (38858-38616) | |
| 723-910, gnl|galGal2|chr1 (78330568-78330809) | |
| 723-910, gnl|hg17|chr3 (99989548-99989792) | |
| 723-910, gnl|Hg17|chr3 (99989568-99989755) | |
| 723-910, gnl|loxAfr1|scaffold_43551 (19576-19332) | |
| 723-910, gnl|mm7|chr16 (58410018-58409779) | |
| 723-910, gnl|Mm7|chr16 (58410000-58409813) | |
| 723-910, gnl|monDom2|scaffold_50 (12251077-12250841) | |
| 723-910, gnl|oryCun1|scaffold_175848 (3449-3209) | |
| 723-910, gnl|panTro1|chr2 (101189677-101189921) | |
| 723-910, gnl|rheMac2|chr2 (18983207-18983451) | |
| 723-910, gnl|rn3|chr11 (42990854-42991093) | |
| 723-910, gnl|xenTro1|scaffold_116 (1156191-1156440) | |
| 1047-1197, gnl|bosTau2|chr1 (22640506-22640656) | |
| 1047-1197, gnl|canFam2|chr33 (8594859-8595023) | |
| 1047-1197, gnl|dasNov1|scaffold_18006 (35416-35245) | |
| 1047-1197, gnl|echTel1|scaffold_312755 (57958-58129) | |
| 1047-1197, gnl|galGal2|chr1 (78335481-78335661) | |
| 1047-1197, gnl|hg17|chr3 (99993368-99993549) | |
| 1047-1197, gnl|Hg17|chr3 (99993372-99993522) | |
| 1047-1197, gnl|loxAfr1|scaffold_43551 (15635-15453) | |
| 1047-1197, gnl|mm7|chr16 (58408626-58408452) | |
| 1047-1197, gnl|Mm7|chr16 (58408623-58408474) | |
| 1047-1197, gnl|monDom2|scaffold_50 (12247308-12247144) | |
| 1047-1197, gnl|oryCun1|scaffold_96488 (3646-3465) | |
| 1047-1197, gnl|panTro1|chr2 (101193497-101193678) | |
| 1047-1197, gnl|rheMac2|chr2 (18987305-18987481) | |
| 1047-1197, gnl|rn3|chr11 (42992462-42992634) | |
| 1047-1197, gnl|xenTro1|scaffold_116 (1158703-1158884) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| kid (0.259471) | |
| tbr (0.154178) | |
| bfe (0.149858) | |
| cty (0.10408) | |
| ldo (0.0970026) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| kid (0.259471) | |
| tbr (0.154178) | |
| bfe (0.149858) | |
| cty (0.10408) | |
| ldo (0.0970026) |