Ss1.1-ruio32_p24.5
|
GGTCGTCTGGTACTCTAGGAGCTTGGGGTACGCCGGCCGAAGTACCAAGTTTATAGTCAT
GTCGGCGTCGGTGTTGTCGGTAATCTCCCGGTTCTTAGAAGAGTACTTGAGCTCCACTCC
TCAGCGTCTGAAATTGTTGGATGCATATCTCTTGTATATACTGCTGACCGGGGCGCTGCA
ATTCGGTTACTGTCTCCTCGTGGGGACCTTCCCCTTCAACTCTTTCCTCTCCGGCTTTAT
CTCTTGCGTGGGGAGCTTCATTCTAGCGGTGTGTCTGAGAATACAGATCAACCCGCAGAA
CAAAGCAGATTTCCAAGGCATCTCCCCAGAGCGAGCCTTTGCTGATTTTCTCTTTGCCAG
CACCATCCTGCACCTCGTTGTCATGAACTTTGTTGGCTGAATCATTCCCGTTTACTTAAT
TGAGGAGAAGGAGACTAGAAGAAGGTTCACTCTGATTTCCCCTGGACAAGAGCTCTTAAG
ATGGCAGTTTGCTGGACACATGGATTTTCTTCAGATTTATGCTTACTACCACTCTGATTG
TACAGAGCCCAGAAAAGTCCCGCGGCTTCTGACTCAGAATAACTTTGTAACTTCGTACTG
GTCATTTATTAATACAGTCTTTGCCTGCCATTAAATGTAACCTTTTTGCCTTCCAGATTA
AAGAATTCCATGCCACTCCTAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGTCGTCTGGTACTCTAGGAGCTTGGGGTACGCCGGCCGAAGTACCAAGTTTATAGTCAT
GTCGGCGTCGGTGTTGTCGGTAATCTCCCGGTTCTTAGAAGAGTACTTGAGCTCCACTCC
TCAGCGTCTGAAATTGTTGGATGCATATCTCTTGTATATACTGCTGACCGGGGCGCTGCA
ATTCGGTTACTGTCTCCTCGTGGGGACCTTCCCCTTCAACTCTTTCCTCTCCGGCTTTAT
CTCTTGCGTGGGGAGCTTCATTCTAGCGGTGTGTCTGAGAATACAGATCAACCCGCAGAA
CAAAGCAGATTTCCAAGGCATCTCCCCAGAGCGAGCCTTTGCTGATTTTCTCTTTGCCAG
CACCATCCTGCACCTCGTTGTCATGAACTTTGTTGGCTGAATCATTCCCGTTTACTTAAT
TGAGGAGAAGGAGACTAGAAGAAGGTTCACTCTGATTTCCCCTGGACAAGAGCTCTTAAG
ATGGCAGTTTGCTGGACACATGGATTTTCTTCAGATTTATGCTTACTACCACTCTGATTG
TACAGAGCCCAGAAAAGTCCCGCGGCTTCTGACTCAGAATAACTTTGTAACTTCGTACTG
GTCATTTATTAATACAGTCTTTGCCTGCCATTAAATGTAACCTTTTTGCCTTCCAGATTA
AAGAATTCCATGCCACTCCTAAAA
|
|
54-269, gnl|bosTau2|chr10 (14428008-14428223) |
|
54-269, gnl|Hg17|chr14 (22127903-22127693) |
|
54-269, gnl|Mm7|chr14 (49123872-49123657) |
| |
|
443-680, gnl|bosTau2|chr10 (14449471-14449715) |
|
443-680, gnl|canFam2|chr8 (5967450-5967707) |
|
443-680, gnl|dasNov1|scaffold_523 (121193-121435) |
|
443-680, gnl|echTel1|scaffold_6113 (870-627) |
|
443-680, gnl|hg17|chr14 (22103602-22103827) |
|
443-680, gnl|Hg17|chr14 (22103879-22103648) |
|
443-680, gnl|monDom2|scaffold_12 (27450885-27450627) |
|
443-680, gnl|oryCun1|scaffold_177867 (28963-29202) |
|
443-680, gnl|panTro1|chr15 (21045038-21045263) |
|
443-680, gnl|rheMac2|chr7 (85372168-85372384) |
|
443-680, gnl|rn3|chr15 (32301245-32301471) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
54-269, gnl|bosTau2|chr10 (14428008-14428223) |
|
54-269, gnl|Hg17|chr14 (22127903-22127693) |
|
54-269, gnl|Mm7|chr14 (49123872-49123657) |
| |
|
443-680, gnl|bosTau2|chr10 (14449471-14449715) |
|
443-680, gnl|canFam2|chr8 (5967450-5967707) |
|
443-680, gnl|dasNov1|scaffold_523 (121193-121435) |
|
443-680, gnl|echTel1|scaffold_6113 (870-627) |
|
443-680, gnl|hg17|chr14 (22103602-22103827) |
|
443-680, gnl|Hg17|chr14 (22103879-22103648) |
|
443-680, gnl|monDom2|scaffold_12 (27450885-27450627) |
|
443-680, gnl|oryCun1|scaffold_177867 (28963-29202) |
|
443-680, gnl|panTro1|chr15 (21045038-21045263) |
|
443-680, gnl|rheMac2|chr7 (85372168-85372384) |
|
443-680, gnl|rn3|chr15 (32301245-32301471) |
|
col (0.780031) |
|
nje (0.66368) |
|
thg (0.633955) |
|
sag (0.548145) |
|
sin (0.524843) |
|
pro (0.512033) |
|
pgl (0.473934) |
|
lnt (0.426925) |
|
amn (0.417711) |
|
lyg (0.399308) |
|
ova (0.387397) |
|
nlu (0.383362) |
|
sug (0.381874) |
|
nep (0.36785) |
|
sto (0.359648) |
|
med (0.348756) |
|
rec (0.346141) |
|
eye (0.341006) |
|
fhi (0.339155) |
|
mga (0.32041) |
|
sme (0.305437) |
|
jej (0.296765) |
|
lin (0.291206) |
|
cga (0.279096) |
|
fce (0.271592) |
|
pla (0.267344) |
|
bla (0.248694) |
|
cbe (0.239234) |
|
ebs (0.236602) |
|
jca (0.22792) |
|
hea (0.204499) |
|
fli (0.202881) |
|
fcc (0.197785) |
|
eje (0.197668) |
|
ton (0.1755) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
cki (0.165235) |
|
cje (0.165235) |
|
nco (0.161734) |
|
cag (0.151194) |
|
isp (0.150376) |
|
fat (0.147427) |
|
ski (0.146735) |
|
spl (0.143184) |
|
pty (0.142714) |
|
cst (0.140036) |
|
nca (0.136874) |
|
che (0.136314) |
|
ssp (0.13552) |
|
nmm (0.132802) |
|
ute (0.132784) |
|
cov (0.132153) |
|
kid (0.129735) |
|
ret (0.128733) |
|
cbr (0.127975) |
|
ese (0.126502) |
|
tra (0.123092) |
|
cly (0.120642) |
|
spc (0.113366) |
|
ldo (0.0970026) |
|
col (0.780031) |
|
nje (0.66368) |
|
thg (0.633955) |
|
sag (0.548145) |
|
sin (0.524843) |
|
pro (0.512033) |
|
pgl (0.473934) |
|
lnt (0.426925) |
|
amn (0.417711) |
|
lyg (0.399308) |
|
ova (0.387397) |
|
nlu (0.383362) |
|
sug (0.381874) |
|
nep (0.36785) |
|
sto (0.359648) |
|
med (0.348756) |
|
rec (0.346141) |
|
eye (0.341006) |
|
fhi (0.339155) |
|
mga (0.32041) |
|
sme (0.305437) |
|
jej (0.296765) |
|
lin (0.291206) |
|
cga (0.279096) |
|
fce (0.271592) |
|
pla (0.267344) |
|
bla (0.248694) |
|
cbe (0.239234) |
|
ebs (0.236602) |
|
jca (0.22792) |
|
hea (0.204499) |
|
fli (0.202881) |
|
fcc (0.197785) |
|
eje (0.197668) |
|
ton (0.1755) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
cki (0.165235) |
|
cje (0.165235) |
|
nco (0.161734) |
|
cag (0.151194) |
|
isp (0.150376) |
|
fat (0.147427) |
|
ski (0.146735) |
|
spl (0.143184) |
|
pty (0.142714) |
|
cst (0.140036) |
|
nca (0.136874) |
|
che (0.136314) |
|
ssp (0.13552) |
|
nmm (0.132802) |
|
ute (0.132784) |
|
cov (0.132153) |
|
kid (0.129735) |
|
ret (0.128733) |
|
cbr (0.127975) |
|
ese (0.126502) |
|
tra (0.123092) |
|
cly (0.120642) |
|
spc (0.113366) |
|
ldo (0.0970026) |
