Non-Coding RNA Search

Ss1.1-ruio33_h9.5

Sequence:


               
               TCCAGGAGAAAGTGACATTTGAGCGGGGCTTTGCAGGATGAATAAGAGTTCACCAAGCAG
ACAAGGCAAGGAAGAGTGTTGCAGAAAGGGAACAGTATATGCAAAGACATTTCGATTCAC
GATCTCAGATCTTTCACTGGGGACCTAGATTCCACAGGCAATATCCCAAGATTCAAGGCC
TTATTAAACAAACAAGCAAAATGCAAACCAAACCATAAGTCATGTATTCGCATATGTATG
CTTTCTCCTGAGAACTTGACCATTGGATGCAAATATACAATGAGGTTCCTGGAGTCCAAG
ATGTTTTTAAGCCAGGGCACAACCAGAAACTTGGCTGTCTTTGGTGGATAGAGTGGCTCC
AATATTTTGTTCTCTCCCCACAGGGCACTGACAGAAAAATGAAGTCTTTTTTATCTGGAA
AGTCATTTCCAGACTTACTCACTCTGTACCAAGGGAAGTTATTTCTCGTAAAACTTTTTA
AGCCATTTATCAGCAGGTCCTTGTTGACTCAGGGCATAATGAGTTCCTGAAACATCCTCG
TCTTTTGGAGGTCGGAGTGTAGCTGGAAGAATTTCAAGGGAAAAAATTCTCGGCGTTGGT
CAGGAAATGTGTGAGAGGTTGTTGAAAACACCAGGAGCCCAGGGGAACAGGCTGCTGGCT
CGGGCGGAGCCCATGCAGAGGCGCTTCTGCGGCCGAGGGTCTGGAAATGAATCCATCATA
CATGAGTGCCATAGAGTTTAGTCAGTGTCTCATCACTTTTACAGAAAACAAAGTCCAGTA
ATAGCAAATCTTAGCACATCCTCACGTTTATTATAAATAGGTGTTTTTTTTAATAATTTT
TACCGACACTCAGAAACCATGCAGAACTGTGTGCATTAATACATCTATGTATCTATACCT
ATCTCTATCTATGTATCAGCTCATGGTAGAAAACCATAGCTAGGAAGCCTCGCCGACTTA
CGCATACCAAGTGATCTTGTTTACAGTATTCTGTTGACAGTGCCAATACATGATGAAGAA
ATTAACATGTCACATTAACACAGTGTAACTGATGACCGTATGTACAATTCCATGAACTCA
ATCTATTGTCTCCTGTGTTCTTAAATTAAAAACAAAGTATTTATAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCAGGAGAAAGTGACATTTGAGCGGGGCTTTGCAGGATGAATAAGAGTTCACCAAGCAG
ACAAGGCAAGGAAGAGTGTTGCAGAAAGGGAACAGTATATGCAAAGACATTTCGATTCAC
GATCTCAGATCTTTCACTGGGGACCTAGATTCCACAGGCAATATCCCAAGATTCAAGGCC
TTATTAAACAAACAAGCAAAATGCAAACCAAACCATAAGTCATGTATTCGCATATGTATG
CTTTCTCCTGAGAACTTGACCATTGGATGCAAATATACAATGAGGTTCCTGGAGTCCAAG
ATGTTTTTAAGCCAGGGCACAACCAGAAACTTGGCTGTCTTTGGTGGATAGAGTGGCTCC
AATATTTTGTTCTCTCCCCACAGGGCACTGACAGAAAAATGAAGTCTTTTTTATCTGGAA
AGTCATTTCCAGACTTACTCACTCTGTACCAAGGGAAGTTATTTCTCGTAAAACTTTTTA
AGCCATTTATCAGCAGGTCCTTGTTGACTCAGGGCATAATGAGTTCCTGAAACATCCTCG
TCTTTTGGAGGTCGGAGTGTAGCTGGAAGAATTTCAAGGGAAAAAATTCTCGGCGTTGGT
CAGGAAATGTGTGAGAGGTTGTTGAAAACACCAGGAGCCCAGGGGAACAGGCTGCTGGCT
CGGGCGGAGCCCATGCAGAGGCGCTTCTGCGGCCGAGGGTCTGGAAATGAATCCATCATA
CATGAGTGCCATAGAGTTTAGTCAGTGTCTCATCACTTTTACAGAAAACAAAGTCCAGTA
ATAGCAAATCTTAGCACATCCTCACGTTTATTATAAATAGGTGTTTTTTTTAATAATTTT
TACCGACACTCAGAAACCATGCAGAACTGTGTGCATTAATACATCTATGTATCTATACCT
ATCTCTATCTATGTATCAGCTCATGGTAGAAAACCATAGCTAGGAAGCCTCGCCGACTTA
CGCATACCAAGTGATCTTGTTTACAGTATTCTGTTGACAGTGCCAATACATGATGAAGAA
ATTAACATGTCACATTAACACAGTGTAACTGATGACCGTATGTACAATTCCATGAACTCA
ATCTATTGTCTCCTGTGTTCTTAAATTAAAAACAAAGTATTTATAATG

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               791-1100, gnl|bosTau2|chr4 (16565938-16566255)
               

               
               791-1100, gnl|Hg17|chr16 (8785598-8785895)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               791-1100, gnl|bosTau2|chr4 (16565938-16566255)
               

               
               791-1100, gnl|Hg17|chr16 (8785598-8785895)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

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               fco (0.471624)
               

               
               kid (0.389206)
               

               
               lun (0.300978)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               cli (0.152812)
               

               
               lin (0.145603)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.471624)
               

               
               kid (0.389206)
               

               
               lun (0.300978)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               cli (0.152812)
               

               
               lin (0.145603)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	791-1100, gnl\|bosTau2\|chr4 (16565938-16566255)
	791-1100, gnl\|Hg17\|chr16 (8785598-8785895)

	fco (0.471624)
	kid (0.389206)
	lun (0.300978)
	hyp (0.285673)
	fce (0.271592)
	ece (0.229305)
	sin (0.174948)
	eye (0.170503)
	cki (0.165235)
	cli (0.152812)
	lin (0.145603)
	bla (0.124347)
	spc (0.113366)
	jej (0.0989218)