Ss1.1-ruio34_f12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGGTTGTGTATTGTTACCGTGGAGTGCTTTCTTGAAAGAGCGGCGTGTGGCTGTGGCT GGAAAATAGAGAAGTATTTTATGTATAGGCCTGTAAGAGGCAAGAGATGACTTTGGTAAA AAGGAGCCGTTGGGTCAGTAAAGGACGTGGTTAGAAGAGTATATAAGGCGCTACCGGCAG ACAGAAACTGTTGGGAGTGTCTTTAATGCCTTGTCTTCACGGACGTGCGCTTTTCTGTTT TCTTCCGGGCTGTTTGAACCGCTTCAGCCTCCGTAGGCAGTGGCTCCAAAGTGCCGGTCA CAATGGAAGTGAATCCCCCCAAGCAGGAGCACCTGCTGGCCTTGAAAGTAATGCGGTTGA CTAAGCCTACTTTGTTCACCAATATTCCAGTAACATGTGAAGAGAAAGACTTACCTGGAG ATCTCTTTAACCAACTCATGAGAGATGATCCTTCAACTGTAAATGGTGCAGAAATTTTGA TGTTGGGAGAAATGTTGACTTTACCACAGAATTTTGGGAATATATTTTTGGGAGAGACTT TTTCCAGTTATATCAGCGTTCATAATGATAGCAATCAAGTTGTAAAAGATATATTGGTTA AAGCCGATCTTCAGACAAGTTCGCAGCGTCTAAATCTTTCAGCCTCCAATGCTGCGGTGG CTGAACTTAAACCCGACTGTTGTATTGATGACGTCATACACCATGAAGTAAAAGAGATTG GAACACACATCTTGGTGTGTGCAGTGAGCTATACAACTCAGGGTGGAGAAAAAATGTACT TTAGAAAATTCTTCAAATTTCAGGTTCTCAAACCATTGGATGTGAAAACCAAATTTTACA ATGCAGAGACTGATGAAGTATTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGGTTGTGTATTGTTACCGTGGAGTGCTTTCTTGAAAGAGCGGCGTGTGGCTGTGGCT GGAAAATAGAGAAGTATTTTATGTATAGGCCTGTAAGAGGCAAGAGATGACTTTGGTAAA AAGGAGCCGTTGGGTCAGTAAAGGACGTGGTTAGAAGAGTATATAAGGCGCTACCGGCAG ACAGAAACTGTTGGGAGTGTCTTTAATGCCTTGTCTTCACGGACGTGCGCTTTTCTGTTT TCTTCCGGGCTGTTTGAACCGCTTCAGCCTCCGTAGGCAGTGGCTCCAAAGTGCCGGTCA CAATGGAAGTGAATCCCCCCAAGCAGGAGCACCTGCTGGCCTTGAAAGTAATGCGGTTGA CTAAGCCTACTTTGTTCACCAATATTCCAGTAACATGTGAAGAGAAAGACTTACCTGGAG ATCTCTTTAACCAACTCATGAGAGATGATCCTTCAACTGTAAATGGTGCAGAAATTTTGA TGTTGGGAGAAATGTTGACTTTACCACAGAATTTTGGGAATATATTTTTGGGAGAGACTT TTTCCAGTTATATCAGCGTTCATAATGATAGCAATCAAGTTGTAAAAGATATATTGGTTA AAGCCGATCTTCAGACAAGTTCGCAGCGTCTAAATCTTTCAGCCTCCAATGCTGCGGTGG CTGAACTTAAACCCGACTGTTGTATTGATGACGTCATACACCATGAAGTAAAAGAGATTG GAACACACATCTTGGTGTGTGCAGTGAGCTATACAACTCAGGGTGGAGAAAAAATGTACT TTAGAAAATTCTTCAAATTTCAGGTTCTCAAACCATTGGATGTGAAAACCAAATTTTACA ATGCAGAGACTGATGAAGTATTTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 9-348, gnl|bosTau2|chr20 (8808001-8807666) | |
| 9-348, gnl|Hg17|chr5 (64956357-64956689) | |
| 9-348, gnl|Mm7|chr13 (101316133-101315823) | |
| 417-518, gnl|bosTau2|chr20 (8797279-8797178) | |
| 417-518, gnl|canFam2|chr2 (54243787-54243901) | |
| 417-518, gnl|danRer3|chr10 (1199722-1199610) | |
| 417-518, gnl|dasNov1|scaffold_38440 (10009-10123) | |
| 417-518, gnl|echTel1|scaffold_201084 (2331-2217) | |
| 417-518, gnl|galGal2|chrZ (3895009-3895121) | |
| 417-518, gnl|hg17|chr5 (64967520-64967634) | |
| 417-518, gnl|Hg17|chr5 (64967526-64967627) | |
| 417-518, gnl|loxAfr1|scaffold_21737 (43475-43361) | |
| 417-518, gnl|mm7|chr13 (101306280-101306166) | |
| 417-518, gnl|Mm7|chr13 (101306272-101306171) | |
| 417-518, gnl|monDom2|scaffold_27 (30881473-30881587) | |
| 417-518, gnl|oryCun1|scaffold_190407 (4495-4381) | |
| 417-518, gnl|panTro1|chr4 (50965715-50965601) | |
| 417-518, gnl|rheMac2|chr6 (63512576-63512690) | |
| 417-518, gnl|rn3|chr2 (35012199-35012085) | |
| 417-518, gnl|tetNig1|chrUn_random (1993957-1993843) | |
| 417-518, gnl|xenTro1|scaffold_597 (259670-259556) | |
| 600-730, gnl|bosTau2|chr20 (8791013-8790883) | |
| 600-730, gnl|canFam2|chr2 (54252103-54252268) | |
| 600-730, gnl|danRer3|chr10 (1194094-1193928) | |
| 600-730, gnl|dasNov1|scaffold_27736 (49920-49759) | |
| 600-730, gnl|echTel1|scaffold_319091 (7460-7295) | |
| 600-730, gnl|fr1|chrUn (58416746-58416892) | |
| 600-730, gnl|galGal2|chrZ (3896677-3896841) | |
| 600-730, gnl|hg17|chr5 (64978604-64978775) | |
| 600-730, gnl|Hg17|chr5 (64978635-64978765) | |
| 600-730, gnl|loxAfr1|scaffold_21737 (36048-35884) | |
| 600-730, gnl|mm7|chr13 (101298830-101298670) | |
| 600-730, gnl|Mm7|chr13 (101298806-101298676) | |
| 600-730, gnl|monDom2|scaffold_27 (30891464-30891639) | |
| 600-730, gnl|oryCun1|scaffold_193490 (647-811) | |
| 600-730, gnl|panTro1|chr4 (50954533-50954361) | |
| 600-730, gnl|rheMac2|chr6 (63522897-63523067) | |
| 600-730, gnl|rn3|chr2 (35005401-35005240) | |
| 600-730, gnl|tetNig1|chrUn_random (1993601-1993467) | |
| 600-730, gnl|xenTro1|scaffold_597 (258240-258091) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 9-348, gnl|bosTau2|chr20 (8808001-8807666) | |
| 9-348, gnl|Hg17|chr5 (64956357-64956689) | |
| 9-348, gnl|Mm7|chr13 (101316133-101315823) | |
| 417-518, gnl|bosTau2|chr20 (8797279-8797178) | |
| 417-518, gnl|canFam2|chr2 (54243787-54243901) | |
| 417-518, gnl|danRer3|chr10 (1199722-1199610) | |
| 417-518, gnl|dasNov1|scaffold_38440 (10009-10123) | |
| 417-518, gnl|echTel1|scaffold_201084 (2331-2217) | |
| 417-518, gnl|galGal2|chrZ (3895009-3895121) | |
| 417-518, gnl|hg17|chr5 (64967520-64967634) | |
| 417-518, gnl|Hg17|chr5 (64967526-64967627) | |
| 417-518, gnl|loxAfr1|scaffold_21737 (43475-43361) | |
| 417-518, gnl|mm7|chr13 (101306280-101306166) | |
| 417-518, gnl|Mm7|chr13 (101306272-101306171) | |
| 417-518, gnl|monDom2|scaffold_27 (30881473-30881587) | |
| 417-518, gnl|oryCun1|scaffold_190407 (4495-4381) | |
| 417-518, gnl|panTro1|chr4 (50965715-50965601) | |
| 417-518, gnl|rheMac2|chr6 (63512576-63512690) | |
| 417-518, gnl|rn3|chr2 (35012199-35012085) | |
| 417-518, gnl|tetNig1|chrUn_random (1993957-1993843) | |
| 417-518, gnl|xenTro1|scaffold_597 (259670-259556) | |
| 600-730, gnl|bosTau2|chr20 (8791013-8790883) | |
| 600-730, gnl|canFam2|chr2 (54252103-54252268) | |
| 600-730, gnl|danRer3|chr10 (1194094-1193928) | |
| 600-730, gnl|dasNov1|scaffold_27736 (49920-49759) | |
| 600-730, gnl|echTel1|scaffold_319091 (7460-7295) | |
| 600-730, gnl|fr1|chrUn (58416746-58416892) | |
| 600-730, gnl|galGal2|chrZ (3896677-3896841) | |
| 600-730, gnl|hg17|chr5 (64978604-64978775) | |
| 600-730, gnl|Hg17|chr5 (64978635-64978765) | |
| 600-730, gnl|loxAfr1|scaffold_21737 (36048-35884) | |
| 600-730, gnl|mm7|chr13 (101298830-101298670) | |
| 600-730, gnl|Mm7|chr13 (101298806-101298676) | |
| 600-730, gnl|monDom2|scaffold_27 (30891464-30891639) | |
| 600-730, gnl|oryCun1|scaffold_193490 (647-811) | |
| 600-730, gnl|panTro1|chr4 (50954533-50954361) | |
| 600-730, gnl|rheMac2|chr6 (63522897-63523067) | |
| 600-730, gnl|rn3|chr2 (35005401-35005240) | |
| 600-730, gnl|tetNig1|chrUn_random (1993601-1993467) | |
| 600-730, gnl|xenTro1|scaffold_597 (258240-258091) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| sme (0.305437) | |
| tbr (0.154178) | |
| lnt (0.142308) | |
| kid (0.129735) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (0.305437) | |
| tbr (0.154178) | |
| lnt (0.142308) | |
| kid (0.129735) |