Ss1.1-ruio34_f15.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTGACTTAGAGAAGCGAGAGCAGCAGCTTACCATTGCAGAATCAGAGCTTCAAAGAGAA AGGAAGGAGCTGAAATCAGAACGTGAACGGAACCTGCAGGAACTCCAAGATTCCATCCGT AGGGCCAAAGAGGATTGTGTTCACCAAGTAGAGCTAGAAAGGTTAAAGATCAGGCAACTG GAAGAGGATAAACACCGACTTCAGCAGCAGCTTAATGATGCTGAAAATAAGTATAAGATT TTGGAAAAGGAGTTTCATCAGTTCAAGGATCAGCAAAGCAACAAACCAGAAATTCGACTC CAATCTGAAATAAATCTTCTCACTTTGGAAAAGGTTGAACTTGAAAGAAAGTTGGAATCT GCGACTAAGTCTAAATTACATTACAAGCAGCAGTGGGGACGAGCTTTGAAAGAACTTGCC AGACTTAAGCAGCGGGAACAGGAAAGTCAAATGGCTCGTCTTAAAAAACAGCAGGAAGAA TTGGAACAGATGAGACTACGTTACCTGGCTGCTGAGGAAAAAGATACAGTGAAAACCGAG AGACAAGAATTGTTGGATATAAGAAATGAACTGAACAGGTTAAGGCAACAAGAACAAAAA CAGAACCAGGATTCCAGAGAGATTGCGAGTGGAAAAATGGATGGCTCACATGGCACTGCC TTGGAAGAAGGCTTGGATGACTACTTGACTCGCCTCATAGAAGAAAGGGATACTTTGATG AGGACGGGTGTGTATAATCACGAGGATCGAATAATAAGTGAACTCGAGCGACAGATCAGA GAGGTTTTGGCCAGAAACAATGCCAGTAATTAATACCATTTGGAAAATCTTTAGAGACTG CAGGTCTCAATTTTAATTGTAAAGCCCTGAAAAGAAGGGATAACGGATGTTTTAAAATGT AATTTTCAGTTTTTTTATAAGCAGAATTTTGTATGTTATTGTATAGTATTTATTTGATTT TATTTACTTTATGCTACTACCTCTCCCACTCTGGCTTATTTGTAATCACATTTTATGTAC TCATTTTAAACGACTTTTCAGTGTTTCTCATAATTTAACATTTCAGGGCTAACTTTCAAA ACAGCTTGTTACTAAATTTGTTCTCAGAGGAATGACTGTAATTTCCACTTATATAATTTT GTATGTTGAGCCAAAAGAGTGTATGTTGCACTTTAAAAATGCTCTCCTGTTCATTTGAAT GGACATTACCTTAAAAAGTTGAGGTCTTTTGTAAATGTGTCTAGTTTTATTTAATTCATT TTAGATTACCGGTTTTTTTAACTTGCAACATTTGCAGGTGACGAGTTTGAAAACAGAACG CAGGACCAATGCAGAAAAGCCATATGTGATCTATTGAGTGACAAACTAGTCATTTATTTA AATAAAGTTAATGCAGATTAAATTTGTTTCAGCTATTGAATTTTCAAATTTTTAGCGTAC TCTTAATTTTTAAGAATAAGAAGCAGTAGCTTAATAAGGTCTTCTTCCCTGTCAGTCTCC TGCTCAAGACTGCACTGTTTTCTTTTGTTGAAAATAGAGGTTTCATTTTCCACTAATAGT AATACTACTTGTTAACTTAAACCCTCCATTTGACCCTCTGTTTTAACATGGAAACAGACA CATAAACGCACTAGTTAAGAAAGTAAAGTGAAAACCTAGTATTTTTTACTCCTCAGTCTT TTATAAAAAGCACCTGCAATTAAGTCACTGGATTTACATAGTGCCATGTCAGTATAAATT TTCAAGAATTCCTTTACATCGCATTCTTCCAAGTCAACATTTACCCTCTAAGCAACACTT TCCACCTCCTTTAACAGGGTACTCGGAAGGTTTATTAGCAAATTCACAGATTTAGGTGAG TCTTGAAATAGTTAAAATTTCTTATTCCCAAATATAATACATTTAAGTATATACTTTAGG AAGTGTATACTATTTACTGATAAAACTTCTACAGAAGCAGAAGAGGCTATTTGGTAATCT AAATTTTCTGTTGGTTTCAATGGAAGTATATTTCTTGTTTAGGAAAGTAAAGTCCCTGCA TGCTTTATATATTTTGTCCCTTATTAACAAGTATTAATCTAAAAACAACCCAACAGTATA AAGAGAGAAATTACTGAATGAGAGAATAATGCATATGTGAATTATAGCAGGAATGTGAGA TATTAATTATGGCTAGTCATTTTCTCTCATTGATTTTTGTGCCACATGAACAGAATAGAA GTATTTTTTTTGTTTCCAAAGGTCTCGGGTAAAATATTGTGGCTGTGCCTTCAATTGCAT TGTGTGCTGCAATGTGACTGTTTTCAAACACTAGAGGGGGCCTTAGATTTAGAGAAACAG AAAGGACGTTTCTAAAATGGATGTGTGGTTTGCCTTCTGTGAAATGATCTTTTGGCTATG TATTTTAACAAATAAAACTCAGAATTGTGTGCAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTGACTTAGAGAAGCGAGAGCAGCAGCTTACCATTGCAGAATCAGAGCTTCAAAGAGAA AGGAAGGAGCTGAAATCAGAACGTGAACGGAACCTGCAGGAACTCCAAGATTCCATCCGT AGGGCCAAAGAGGATTGTGTTCACCAAGTAGAGCTAGAAAGGTTAAAGATCAGGCAACTG GAAGAGGATAAACACCGACTTCAGCAGCAGCTTAATGATGCTGAAAATAAGTATAAGATT TTGGAAAAGGAGTTTCATCAGTTCAAGGATCAGCAAAGCAACAAACCAGAAATTCGACTC CAATCTGAAATAAATCTTCTCACTTTGGAAAAGGTTGAACTTGAAAGAAAGTTGGAATCT GCGACTAAGTCTAAATTACATTACAAGCAGCAGTGGGGACGAGCTTTGAAAGAACTTGCC AGACTTAAGCAGCGGGAACAGGAAAGTCAAATGGCTCGTCTTAAAAAACAGCAGGAAGAA TTGGAACAGATGAGACTACGTTACCTGGCTGCTGAGGAAAAAGATACAGTGAAAACCGAG AGACAAGAATTGTTGGATATAAGAAATGAACTGAACAGGTTAAGGCAACAAGAACAAAAA CAGAACCAGGATTCCAGAGAGATTGCGAGTGGAAAAATGGATGGCTCACATGGCACTGCC TTGGAAGAAGGCTTGGATGACTACTTGACTCGCCTCATAGAAGAAAGGGATACTTTGATG AGGACGGGTGTGTATAATCACGAGGATCGAATAATAAGTGAACTCGAGCGACAGATCAGA GAGGTTTTGGCCAGAAACAATGCCAGTAATTAATACCATTTGGAAAATCTTTAGAGACTG CAGGTCTCAATTTTAATTGTAAAGCCCTGAAAAGAAGGGATAACGGATGTTTTAAAATGT AATTTTCAGTTTTTTTATAAGCAGAATTTTGTATGTTATTGTATAGTATTTATTTGATTT TATTTACTTTATGCTACTACCTCTCCCACTCTGGCTTATTTGTAATCACATTTTATGTAC TCATTTTAAACGACTTTTCAGTGTTTCTCATAATTTAACATTTCAGGGCTAACTTTCAAA ACAGCTTGTTACTAAATTTGTTCTCAGAGGAATGACTGTAATTTCCACTTATATAATTTT GTATGTTGAGCCAAAAGAGTGTATGTTGCACTTTAAAAATGCTCTCCTGTTCATTTGAAT GGACATTACCTTAAAAAGTTGAGGTCTTTTGTAAATGTGTCTAGTTTTATTTAATTCATT TTAGATTACCGGTTTTTTTAACTTGCAACATTTGCAGGTGACGAGTTTGAAAACAGAACG CAGGACCAATGCAGAAAAGCCATATGTGATCTATTGAGTGACAAACTAGTCATTTATTTA AATAAAGTTAATGCAGATTAAATTTGTTTCAGCTATTGAATTTTCAAATTTTTAGCGTAC TCTTAATTTTTAAGAATAAGAAGCAGTAGCTTAATAAGGTCTTCTTCCCTGTCAGTCTCC TGCTCAAGACTGCACTGTTTTCTTTTGTTGAAAATAGAGGTTTCATTTTCCACTAATAGT AATACTACTTGTTAACTTAAACCCTCCATTTGACCCTCTGTTTTAACATGGAAACAGACA CATAAACGCACTAGTTAAGAAAGTAAAGTGAAAACCTAGTATTTTTTACTCCTCAGTCTT TTATAAAAAGCACCTGCAATTAAGTCACTGGATTTACATAGTGCCATGTCAGTATAAATT TTCAAGAATTCCTTTACATCGCATTCTTCCAAGTCAACATTTACCCTCTAAGCAACACTT TCCACCTCCTTTAACAGGGTACTCGGAAGGTTTATTAGCAAATTCACAGATTTAGGTGAG TCTTGAAATAGTTAAAATTTCTTATTCCCAAATATAATACATTTAAGTATATACTTTAGG AAGTGTATACTATTTACTGATAAAACTTCTACAGAAGCAGAAGAGGCTATTTGGTAATCT AAATTTTCTGTTGGTTTCAATGGAAGTATATTTCTTGTTTAGGAAAGTAAAGTCCCTGCA TGCTTTATATATTTTGTCCCTTATTAACAAGTATTAATCTAAAAACAACCCAACAGTATA AAGAGAGAAATTACTGAATGAGAGAATAATGCATATGTGAATTATAGCAGGAATGTGAGA TATTAATTATGGCTAGTCATTTTCTCTCATTGATTTTTGTGCCACATGAACAGAATAGAA GTATTTTTTTTGTTTCCAAAGGTCTCGGGTAAAATATTGTGGCTGTGCCTTCAATTGCAT TGTGTGCTGCAATGTGACTGTTTTCAAACACTAGAGGGGGCCTTAGATTTAGAGAAACAG AAAGGACGTTTCTAAAATGGATGTGTGGTTTGCCTTCTGTGAAATGATCTTTTGGCTATG TATTTTAACAAATAAAACTCAGAATTGTGTGCAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
| 47-209, gnl|bosTau2|chr7 (21270628-21270790) | |
| 47-209, gnl|canFam2|chr11 (16217539-16217689) | |
| 47-209, gnl|danRer3|chrUn (83419314-83419169) | |
| 47-209, gnl|fr1|chrUn (60988551-60988701) | |
| 47-209, gnl|galGal2|chrUn (1471377-1471527) | |
| 47-209, gnl|hg17|chr5 (122740966-122741116) | |
| 47-209, gnl|Hg17|chr5 (122741130-122740968) | |
| 47-209, gnl|loxAfr1|scaffold_10314 (60344-60194) | |
| 47-209, gnl|mm7|chr18 (54088441-54088591) | |
| 47-209, gnl|Mm7|chr18 (54088605-54088443) | |
| 47-209, gnl|monDom2|scaffold_55 (2899877-2899727) | |
| 47-209, gnl|oryCun1|scaffold_197262 (19871-20021) | |
| 47-209, gnl|panTro1|chr4 (129025715-129025865) | |
| 47-209, gnl|rheMac2|chr6 (119772861-119773011) | |
| 47-209, gnl|rn3|chr18 (49256045-49256195) | |
| 47-209, gnl|tetNig1|chrUn_random (104567031-104566881) | |
| 47-209, gnl|xenTro1|scaffold_2 (4369468-4369318) | |
| 332-432, gnl|bosTau2|chr7 (21280753-21280853) | |
| 332-432, gnl|canFam2|chr11 (16207994-16208074) | |
| 332-432, gnl|danRer3|chrUn (83430065-83429985) | |
| 332-432, gnl|dasNov1|scaffold_13205 (15729-15809) | |
| 332-432, gnl|echTel1|scaffold_175827 (83-4) | |
| 332-432, gnl|galGal2|chrUn (1466966-1467027) | |
| 332-432, gnl|hg17|chr5 (122728079-122728159) | |
| 332-432, gnl|Hg17|chr5 (122728189-122728089) | |
| 332-432, gnl|loxAfr1|scaffold_4344 (55111-55174) | |
| 332-432, gnl|mm7|chr18 (54079207-54079287) | |
| 332-432, gnl|Mm7|chr18 (54079317-54079217) | |
| 332-432, gnl|monDom2|scaffold_55 (2907741-2907661) | |
| 332-432, gnl|oryCun1|scaffold_197262 (10482-10562) | |
| 332-432, gnl|panTro1|chr4 (129012782-129012862) | |
| 332-432, gnl|rheMac2|chr6 (119759596-119759676) | |
| 332-432, gnl|rn3|chr18 (49247926-49248006) | |
| 332-432, gnl|tetNig1|chrUn_random (104567524-104567452) | |
| 332-432, gnl|xenTro1|scaffold_2 (4378928-4378849) | |
| 576-1297, gnl|bosTau2|chr7 (21292599-21293300) | |
| 576-1297, gnl|Hg17|chr5 (122710349-122709597) | |
| 576-1297, gnl|Mm7|chr18 (54065089-54064372) | |
| 1330-2433, gnl|bosTau2|chr7 (21293296-21294355) | |
| 1330-2433, gnl|canFam2|chr11 (16190872-16191757) | |
| 1330-2433, gnl|dasNov1|scaffold_41916 (1854-928) | |
| 1330-2433, gnl|echTel1|scaffold_296533 (6081-5173) | |
| 1330-2433, gnl|hg17|chr5 (122708293-122709219) | |
| 1330-2433, gnl|Hg17|chr5 (122709601-122708485) | |
| 1330-2433, gnl|loxAfr1|scaffold_4344 (37538-38477) | |
| 1330-2433, gnl|mm7|chr18 (54063177-54064021) | |
| 1330-2433, gnl|Mm7|chr18 (54064376-54063352) | |
| 1330-2433, gnl|monDom2|scaffold_55 (2921787-2920851) | |
| 1330-2433, gnl|oryCun1|scaffold_199038 (34010-33057) | |
| 1330-2433, gnl|panTro1|chr4 (128978266-128979190) | |
| 1330-2433, gnl|rheMac2|chr6 (119739758-119740669) | |
| 1330-2433, gnl|rn3|chr18 (49229906-49230719) |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 47-209, gnl|bosTau2|chr7 (21270628-21270790) | |
| 47-209, gnl|canFam2|chr11 (16217539-16217689) | |
| 47-209, gnl|danRer3|chrUn (83419314-83419169) | |
| 47-209, gnl|fr1|chrUn (60988551-60988701) | |
| 47-209, gnl|galGal2|chrUn (1471377-1471527) | |
| 47-209, gnl|hg17|chr5 (122740966-122741116) | |
| 47-209, gnl|Hg17|chr5 (122741130-122740968) | |
| 47-209, gnl|loxAfr1|scaffold_10314 (60344-60194) | |
| 47-209, gnl|mm7|chr18 (54088441-54088591) | |
| 47-209, gnl|Mm7|chr18 (54088605-54088443) | |
| 47-209, gnl|monDom2|scaffold_55 (2899877-2899727) | |
| 47-209, gnl|oryCun1|scaffold_197262 (19871-20021) | |
| 47-209, gnl|panTro1|chr4 (129025715-129025865) | |
| 47-209, gnl|rheMac2|chr6 (119772861-119773011) | |
| 47-209, gnl|rn3|chr18 (49256045-49256195) | |
| 47-209, gnl|tetNig1|chrUn_random (104567031-104566881) | |
| 47-209, gnl|xenTro1|scaffold_2 (4369468-4369318) | |
| 332-432, gnl|bosTau2|chr7 (21280753-21280853) | |
| 332-432, gnl|canFam2|chr11 (16207994-16208074) | |
| 332-432, gnl|danRer3|chrUn (83430065-83429985) | |
| 332-432, gnl|dasNov1|scaffold_13205 (15729-15809) | |
| 332-432, gnl|echTel1|scaffold_175827 (83-4) | |
| 332-432, gnl|galGal2|chrUn (1466966-1467027) | |
| 332-432, gnl|hg17|chr5 (122728079-122728159) | |
| 332-432, gnl|Hg17|chr5 (122728189-122728089) | |
| 332-432, gnl|loxAfr1|scaffold_4344 (55111-55174) | |
| 332-432, gnl|mm7|chr18 (54079207-54079287) | |
| 332-432, gnl|Mm7|chr18 (54079317-54079217) | |
| 332-432, gnl|monDom2|scaffold_55 (2907741-2907661) | |
| 332-432, gnl|oryCun1|scaffold_197262 (10482-10562) | |
| 332-432, gnl|panTro1|chr4 (129012782-129012862) | |
| 332-432, gnl|rheMac2|chr6 (119759596-119759676) | |
| 332-432, gnl|rn3|chr18 (49247926-49248006) | |
| 332-432, gnl|tetNig1|chrUn_random (104567524-104567452) | |
| 332-432, gnl|xenTro1|scaffold_2 (4378928-4378849) | |
| 576-1297, gnl|bosTau2|chr7 (21292599-21293300) | |
| 576-1297, gnl|Hg17|chr5 (122710349-122709597) | |
| 576-1297, gnl|Mm7|chr18 (54065089-54064372) | |
| 1330-2433, gnl|bosTau2|chr7 (21293296-21294355) | |
| 1330-2433, gnl|canFam2|chr11 (16190872-16191757) | |
| 1330-2433, gnl|dasNov1|scaffold_41916 (1854-928) | |
| 1330-2433, gnl|echTel1|scaffold_296533 (6081-5173) | |
| 1330-2433, gnl|hg17|chr5 (122708293-122709219) | |
| 1330-2433, gnl|Hg17|chr5 (122709601-122708485) | |
| 1330-2433, gnl|loxAfr1|scaffold_4344 (37538-38477) | |
| 1330-2433, gnl|mm7|chr18 (54063177-54064021) | |
| 1330-2433, gnl|Mm7|chr18 (54064376-54063352) | |
| 1330-2433, gnl|monDom2|scaffold_55 (2921787-2920851) | |
| 1330-2433, gnl|oryCun1|scaffold_199038 (34010-33057) | |
| 1330-2433, gnl|panTro1|chr4 (128978266-128979190) | |
| 1330-2433, gnl|rheMac2|chr6 (119739758-119740669) | |
| 1330-2433, gnl|rn3|chr18 (49229906-49230719) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| cte (0.58548) | |
| ste (0.270416) | |
| tra (0.246184) | |
| clu (0.239292) | |
| gul (0.177588) | |
| rec (0.17307) | |
| eye (0.170503) | |
| ski (0.146735) | |
| liv (0.146284) | |
| spl (0.143184) | |
| kid (0.129735) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.58548) | |
| ste (0.270416) | |
| tra (0.246184) | |
| clu (0.239292) | |
| gul (0.177588) | |
| rec (0.17307) | |
| eye (0.170503) | |
| ski (0.146735) | |
| liv (0.146284) | |
| spl (0.143184) | |
| kid (0.129735) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) |