Non-Coding RNA Search

Ss1.1-ruio34_f18.5

Sequence:


               
               TAGCCCTCCCCTGGGGATGTCTTTCCACCAAACCATCACAAGTGTGGACAGTCATTGCAT
CCACATTTGCAGGCATGTTTCTATGGAGGTTTAATCGATACCGATACTCATTATTTATTT
TAGTTTCATTTTTGTACACATTTCAGATTTGCGAATGCAGTTTTTTTTCCTAAAATTCAT
TTTAACTTGAAAATATTTTAATTCTCCCTATTTAATTAATGCATATATATGAGGTGTGCT
TAAATGTTAATTACATAATTGCATACTTATCAGATTTCACATTGGAATCTATAGTGAAAA
AACAAATACTACTTTTACCAATTTACAGTTTTTTCTGTTGGTTTAAGAGAAGATGTTTGA
CAGCTTTGCCTACTTCCTCCAAGTTCATCTAAACCCACATGTTGCTAAGAAGAGTGTTGA
CTTGGAATATGTGTTTTTTTGTATAACTGTGTAAAAAATATTAAGTTATCTGTTATACTG
AAATTCATCAGCAAAATGTTAGATAAAATGTCTGCACTGTAATCTCTGATCACTGTCACA
TATATAATTGCTTTTTCATTTTGATTTGTAGAATAGCTTTACAGTGGAAACACCAGTAAA
CAACTTTTATACTATTAAAAGGCTTTTTTCCCTTCCTAAATGTTTTAATTGTACCAGTGT
TTTGCCCACTGAAGAAGCTTTTTATGGACCTTGCAACTTTGTTGCTAGCTTGAGGTTGAA
TATTGTGGTTGTACTGTTCATTGTGTGTAGAAATAGTATGAGTACGATTTACATAGATTG
TTCAGTTTTTAATATTAGCCATAGAACTGGTTAGTATCTCAGTAGTTTCATGAAACGTTT
CCTGTATTCTAATCTATTTTGAGAAATTTTGTGGGTTTTTTTAAAATTGTGTCATATGGT
TCAAGTTTGTAGATTTTAATAAGCAACAGTTTTTAAAGATGTGGTAATCTTCCAACTAAT
AATTTACCTGTCTGTCATGACCCCACGAACTGCATCTTTAAATCCATAAATAAGTTTCCT
TAAGTATCGTACTTTTCTGTTCTTTCATGATTAGTGATAAGGGGAAGCACAAGAAAAATT
TCAGTAGAATACAGTTTTTATTTTGTAAACACTAATGTATTAAACTTGCTATACCTTGAA
GCAAATAATATATATTTTTATTTGAATTGTATATATGAATTGGATGTTATAACTAGTTGA
TTTTTTTTCATTGTGTTAGAAGTATTTTCACTAAACCAGGTCAATTGGTTACCTCAGTAT
TACAACCAATTATAGTCCAAGGGACCATTTTCCCCCAAGTCTCTGTTGTACTTTATTATG
TGAAGTCTGCGTTTCTGTGACTCTTAAAGCTGTTGGTGAGGTGGGACGAGTGCACTTGCT
TCCTGTGGCAATAAAGACTTTCTGTGCCTCACAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGCCCTCCCCTGGGGATGTCTTTCCACCAAACCATCACAAGTGTGGACAGTCATTGCAT
CCACATTTGCAGGCATGTTTCTATGGAGGTTTAATCGATACCGATACTCATTATTTATTT
TAGTTTCATTTTTGTACACATTTCAGATTTGCGAATGCAGTTTTTTTTCCTAAAATTCAT
TTTAACTTGAAAATATTTTAATTCTCCCTATTTAATTAATGCATATATATGAGGTGTGCT
TAAATGTTAATTACATAATTGCATACTTATCAGATTTCACATTGGAATCTATAGTGAAAA
AACAAATACTACTTTTACCAATTTACAGTTTTTTCTGTTGGTTTAAGAGAAGATGTTTGA
CAGCTTTGCCTACTTCCTCCAAGTTCATCTAAACCCACATGTTGCTAAGAAGAGTGTTGA
CTTGGAATATGTGTTTTTTTGTATAACTGTGTAAAAAATATTAAGTTATCTGTTATACTG
AAATTCATCAGCAAAATGTTAGATAAAATGTCTGCACTGTAATCTCTGATCACTGTCACA
TATATAATTGCTTTTTCATTTTGATTTGTAGAATAGCTTTACAGTGGAAACACCAGTAAA
CAACTTTTATACTATTAAAAGGCTTTTTTCCCTTCCTAAATGTTTTAATTGTACCAGTGT
TTTGCCCACTGAAGAAGCTTTTTATGGACCTTGCAACTTTGTTGCTAGCTTGAGGTTGAA
TATTGTGGTTGTACTGTTCATTGTGTGTAGAAATAGTATGAGTACGATTTACATAGATTG
TTCAGTTTTTAATATTAGCCATAGAACTGGTTAGTATCTCAGTAGTTTCATGAAACGTTT
CCTGTATTCTAATCTATTTTGAGAAATTTTGTGGGTTTTTTTAAAATTGTGTCATATGGT
TCAAGTTTGTAGATTTTAATAAGCAACAGTTTTTAAAGATGTGGTAATCTTCCAACTAAT
AATTTACCTGTCTGTCATGACCCCACGAACTGCATCTTTAAATCCATAAATAAGTTTCCT
TAAGTATCGTACTTTTCTGTTCTTTCATGATTAGTGATAAGGGGAAGCACAAGAAAAATT
TCAGTAGAATACAGTTTTTATTTTGTAAACACTAATGTATTAAACTTGCTATACCTTGAA
GCAAATAATATATATTTTTATTTGAATTGTATATATGAATTGGATGTTATAACTAGTTGA
TTTTTTTTCATTGTGTTAGAAGTATTTTCACTAAACCAGGTCAATTGGTTACCTCAGTAT
TACAACCAATTATAGTCCAAGGGACCATTTTCCCCCAAGTCTCTGTTGTACTTTATTATG
TGAAGTCTGCGTTTCTGTGACTCTTAAAGCTGTTGGTGAGGTGGGACGAGTGCACTTGCT
TCCTGTGGCAATAAAGACTTTCTGTGCCTCACAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               9-1413, gnl|bosTau2|chr2 (2781641-2783081)
               

               
               9-1413, gnl|Hg17|chr2 (191381550-191382998)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-1413, gnl|bosTau2|chr2 (2781641-2783081)
               

               
               9-1413, gnl|Hg17|chr2 (191381550-191382998)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

Help | Less info


               
               fco (0.471624)
               

               
               kid (0.389206)
               

               
               thg (0.380373)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               fce (0.271592)
               

               
               tra (0.246184)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               ese (0.126502)
               

               
               med (0.116252)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.471624)
               

               
               kid (0.389206)
               

               
               thg (0.380373)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               fce (0.271592)
               

               
               tra (0.246184)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               ese (0.126502)
               

               
               med (0.116252)

	9-1413, gnl\|bosTau2\|chr2 (2781641-2783081)
	9-1413, gnl\|Hg17\|chr2 (191381550-191382998)

	fco (0.471624)
	kid (0.389206)
	thg (0.380373)
	liv (0.292569)
	lin (0.291206)
	fce (0.271592)
	tra (0.246184)
	pgl (0.236967)
	mgp (0.230681)
	fli (0.202881)
	fcc (0.197785)
	gul (0.177588)
	fty (0.17584)
	fbs (0.175346)
	sin (0.174948)
	mcp (0.170648)
	ese (0.126502)
	med (0.116252)