Non-Coding RNA Search

Ss1.1-ruio34_g24.5

Sequence:


               
               TGTGAATATTTTTACCACATAATTATTAATATGTTTGATTCTGGAGTACTTTCATAAGCC
TCTGGAGGTGTTACAGAATATACAGTATATGCTCAATTACCCTTAGAACATCTGAAGAAA
CCTGAATTTCAACACATCTGTCCCTTAAGGTTTCAGAAAAGGGACTATGGATCTGTATTT
CCAGTCTTTTAACAAGCTCACAAAGGCATTATGAGCCAAATTCTGTTCATACAAGTAATT
TCCAAAGCATAGTTTTCAAGTCCTTGGTTTTCTAAATTATTCTTCTAATGTTTTTTCCTA
ATTCATTCATTTACATCAAAATGTATTTCAACCCGAAGTAACAATAGGAAATACTTTGAA
ATGCTTGATTTCATAAAGCCACTAGATGGCATCTTTGTAAAAATAAAAGCACTTTAGAAG
ATGTTTATTCAATAAATAAGGGCTGAGATAAATAAAGGAAGATTCCTTTCTCATGAGAAA
TAAAGATGAGTCATTCTGGGCAAAAAATCCTTAGAAAAATGCATAGATTTATTTTGAAAA
GTAAAATGGAAAATAGTATTTTAAAATTGATTTTCCGCCTTCAGAATTGAGGCTCTTTTT
CTGATTGGTTGTGTTCAGCTTGCATTTACATTTATTTTGTATAACCAAACTATATATTTG
TGTACGTGTGTGTGTGTGGTTTTGATGTGCTAATAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGAATATTTTTACCACATAATTATTAATATGTTTGATTCTGGAGTACTTTCATAAGCC
TCTGGAGGTGTTACAGAATATACAGTATATGCTCAATTACCCTTAGAACATCTGAAGAAA
CCTGAATTTCAACACATCTGTCCCTTAAGGTTTCAGAAAAGGGACTATGGATCTGTATTT
CCAGTCTTTTAACAAGCTCACAAAGGCATTATGAGCCAAATTCTGTTCATACAAGTAATT
TCCAAAGCATAGTTTTCAAGTCCTTGGTTTTCTAAATTATTCTTCTAATGTTTTTTCCTA
ATTCATTCATTTACATCAAAATGTATTTCAACCCGAAGTAACAATAGGAAATACTTTGAA
ATGCTTGATTTCATAAAGCCACTAGATGGCATCTTTGTAAAAATAAAAGCACTTTAGAAG
ATGTTTATTCAATAAATAAGGGCTGAGATAAATAAAGGAAGATTCCTTTCTCATGAGAAA
TAAAGATGAGTCATTCTGGGCAAAAAATCCTTAGAAAAATGCATAGATTTATTTTGAAAA
GTAAAATGGAAAATAGTATTTTAAAATTGATTTTCCGCCTTCAGAATTGAGGCTCTTTTT
CTGATTGGTTGTGTTCAGCTTGCATTTACATTTATTTTGTATAACCAAACTATATATTTG
TGTACGTGTGTGTGTGTGGTTTTGATGTGCTAATAG

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               107-677, gnl|bosTau2|chr24 (7160043-7159496)
               

               
               107-677, gnl|Hg17|chr7 (122771519-122770978)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               107-677, gnl|bosTau2|chr24 (7160043-7159496)
               

               
               107-677, gnl|Hg17|chr7 (122771519-122770978)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               vin (0.332557)
               

               
               lin (0.291206)
               

               
               kid (0.259471)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               lin (0.291206)
               

               
               kid (0.259471)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

	107-677, gnl\|bosTau2\|chr24 (7160043-7159496)
	107-677, gnl\|Hg17\|chr7 (122771519-122770978)

	vin (0.332557)
	lin (0.291206)
	kid (0.259471)
	fco (0.157208)
	isp (0.150376)
	fat (0.147427)
	lyg (0.133103)
	ret (0.128733)
	sug (0.127291)
	tra (0.123092)
	med (0.116252)
	ecc (0.115035)