Non-Coding RNA Search

Ss1.1-ruio34_h24.5

Sequence:


               
               GTTTAAGCCTTACAGTTGTCCAATAGCTCAGGGCTAGTTGGTTAGAAATTCCTTTATTTT
TTTCTCCCCTTCAAACCACAGTCACTTCGAATCAGCCGTACAGCTAACAGCCGGACCGGC
TGACCGGCATTTCCAAGGAACGACCTAAACTGGGGATGCACATTCATTCTGCAGTTAGGG
ACTCCGACTTTCACCTTCTCGCCGACCTATCCTCCCAGCTTAACCCATGTTCTTGTGTTG
AAATGTCTTTGCGAATCTATAAGCCACGCAAATGTATTTTCATAAGGTCGATAGAAATAT
AGTAAGATTTTAAGTCTGGAAGAATCAACTATAAAATAGTAAGAATGAATCTAAGAAGCA
TCACAAAAGATAGCCAATTAATGGGTGGCATGACAGCCCCTGGGTCACACTCTTTGGAGC
TTAAACACAATGCTGCGTTTTAAGGAAGTAAAATAAGAGACTGAAAAGACCTCTCTTATT
AAGCCCCAGAAAGAATTTAGTTTGACTAATCCATACAGTTTCCAGCCTCTCCACTTGTTT
TGCATGGAAGAGAACCACACATCAATACTCCAAAGCAGGATGATTCCAGAGGAATTTTAT
CTTTAAATAGAACCCATCCTCAATTATAGTAAACTTAAAAGGGAAAAAAAAAATGTATCA
CTGTGAAATAACTCACAGCTACATCATATTTGATTTTTTAAAAAACAAAAACCTTCTGTA
ATAAGACCTTAAAGTAACCCAACTTTAAGCACTGCTCTTTTCTCCCCAGACACACAACCT
AAGGCTTTATCTGTCATAAAACTGCATGATTCGAAAGCTTTATTTCTGTATGCAGATGCT
ACTTGTTAATGATGGAAGCCAAATTGTTGTATTGCTATGTCTTTTGTGTCTAGCAGTTGA
GAGAATTATGTGACCAATGATATAATTGGATTGTGGGGTTGCCCTTTGCAAAATAAATTT
CTTTGATTATTGTTGCTGCTTTAATTATTAGAAAATGAACCATTTGTTACATGCCCCCAA
ATTATAAGTTTTGTAAAAATTGGAAAGAAAGTTGCTCCTAAATTGACTCTTTTTTAACTT
TATGCATTCACACAACAACAATCTGGTGTAATGTAGAAAATGGAAGCACATATTTTGGGC
AGAAAAACGCCAATTAAAAATACTTATGAAAAATTATTATCCCTGTGCAACAATTATAGA
TTTAAATAATCATAATATTTAACAAATATAAACTGTTCTCATAATTTTTTGCCTCAAAAA
TGCAATAGCTCATTCCCTCAACTGCTATCAGTAGGGCAGATGCTTTGATTTTTTTTTGGT
TTTCTTCCAAGTTATTGTGCTGTACTGCTTGTTCGTGTTTAGAAGTGTGCGTTATGCATT
TCATTTTAGTACGCTGTTTCTATGTTGTTTTTGTTCTTTTAATAAAATGTGTAAATTTCA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTAAGCCTTACAGTTGTCCAATAGCTCAGGGCTAGTTGGTTAGAAATTCCTTTATTTT
TTTCTCCCCTTCAAACCACAGTCACTTCGAATCAGCCGTACAGCTAACAGCCGGACCGGC
TGACCGGCATTTCCAAGGAACGACCTAAACTGGGGATGCACATTCATTCTGCAGTTAGGG
ACTCCGACTTTCACCTTCTCGCCGACCTATCCTCCCAGCTTAACCCATGTTCTTGTGTTG
AAATGTCTTTGCGAATCTATAAGCCACGCAAATGTATTTTCATAAGGTCGATAGAAATAT
AGTAAGATTTTAAGTCTGGAAGAATCAACTATAAAATAGTAAGAATGAATCTAAGAAGCA
TCACAAAAGATAGCCAATTAATGGGTGGCATGACAGCCCCTGGGTCACACTCTTTGGAGC
TTAAACACAATGCTGCGTTTTAAGGAAGTAAAATAAGAGACTGAAAAGACCTCTCTTATT
AAGCCCCAGAAAGAATTTAGTTTGACTAATCCATACAGTTTCCAGCCTCTCCACTTGTTT
TGCATGGAAGAGAACCACACATCAATACTCCAAAGCAGGATGATTCCAGAGGAATTTTAT
CTTTAAATAGAACCCATCCTCAATTATAGTAAACTTAAAAGGGAAAAAAAAAATGTATCA
CTGTGAAATAACTCACAGCTACATCATATTTGATTTTTTAAAAAACAAAAACCTTCTGTA
ATAAGACCTTAAAGTAACCCAACTTTAAGCACTGCTCTTTTCTCCCCAGACACACAACCT
AAGGCTTTATCTGTCATAAAACTGCATGATTCGAAAGCTTTATTTCTGTATGCAGATGCT
ACTTGTTAATGATGGAAGCCAAATTGTTGTATTGCTATGTCTTTTGTGTCTAGCAGTTGA
GAGAATTATGTGACCAATGATATAATTGGATTGTGGGGTTGCCCTTTGCAAAATAAATTT
CTTTGATTATTGTTGCTGCTTTAATTATTAGAAAATGAACCATTTGTTACATGCCCCCAA
ATTATAAGTTTTGTAAAAATTGGAAAGAAAGTTGCTCCTAAATTGACTCTTTTTTAACTT
TATGCATTCACACAACAACAATCTGGTGTAATGTAGAAAATGGAAGCACATATTTTGGGC
AGAAAAACGCCAATTAAAAATACTTATGAAAAATTATTATCCCTGTGCAACAATTATAGA
TTTAAATAATCATAATATTTAACAAATATAAACTGTTCTCATAATTTTTTGCCTCAAAAA
TGCAATAGCTCATTCCCTCAACTGCTATCAGTAGGGCAGATGCTTTGATTTTTTTTTGGT
TTTCTTCCAAGTTATTGTGCTGTACTGCTTGTTCGTGTTTAGAAGTGTGCGTTATGCATT
TCATTTTAGTACGCTGTTTCTATGTTGTTTTTGTTCTTTTAATAAAATGTGTAAATTTCA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               202-1439, gnl|bosTau2|chr17 (9673183-9671965)
               

               
               202-1439, gnl|Hg17|chrX (131232906-131231567)
               

               
               202-1439, gnl|Mm7|chrX (46207166-46205753)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               202-1439, gnl|bosTau2|chr17 (9673183-9671965)
               

               
               202-1439, gnl|Hg17|chrX (131232906-131231567)
               

               
               202-1439, gnl|Mm7|chrX (46207166-46205753)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               lun (1.3544)
               

               
               amn (0.835422)
               

               
               isp (0.451128)
               

               
               ute (0.265569)
               

               
               sin (0.174948)
               

               
               kid (0.129735)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (1.3544)
               

               
               amn (0.835422)
               

               
               isp (0.451128)
               

               
               ute (0.265569)
               

               
               sin (0.174948)
               

               
               kid (0.129735)

	202-1439, gnl\|bosTau2\|chr17 (9673183-9671965)
	202-1439, gnl\|Hg17\|chrX (131232906-131231567)
	202-1439, gnl\|Mm7\|chrX (46207166-46205753)

	lun (1.3544)
	amn (0.835422)
	isp (0.451128)
	ute (0.265569)
	sin (0.174948)
	kid (0.129735)