Non-Coding RNA Search

Ss1.1-ruio34_j16.5

Sequence:


               
               GTCGGGGGGAGTCCAGTTTGTATTAGGACATGTTTTGTGTTAAGCAGAACATATTTTAGA
AGAAAAAAAAAGTCAGTTAAAGGTTCTGGCCATTTCACCTGAATGAACAGTCACTCTGGG
CAAAACTTTTGTGATGTTTTGTTCTGTGGGATTTTGTGCTTACTACTGTATAATGCATGT
GGCACAGGATACTCTGGTTTTGTCGATGTAAACATTGAAAGTATTATATTTTTATAAAAA
TGTTTATTTTTAATGATACAAGAAAACTTTTGTTAGGACACAAAAATACTACACTGTGAA
CATTTCAGAAAAGGTATGTCAAACTTGGATTAATAACAGCATGATTCTAAATTGCTGTAA
ATAGTGATAAGGAAATGTCCTCACTGCCAAGACACCCCACCCTCATTACATCACCAGGAC
TTGAAGCCAAGGGTTAGCACAGCAGCTAAAACCCAGTGATAGAGTTGGGCTCTCATTGCA
GGAGAGTGATTACAACCCAAAGCTCTTTGACAACGGTGGAACTTACCAGAAGACATAAGG
AATTGTACTGCAGAGATATTCCTGATCACATATTACTCTTTCAGAAGTGTAAAGAGTAGT
ACTAATTCACAGAATGTTGTAAATGATGGATGAGGAAGAAAAAATCTGCTCTGCAAAAGA
ACTCTCTCTACTGGTATCAAGAGAATGAACACATCAAGTAGAGACAACCCATCAACAAGA
TTACACAACTGTATATATGCTTGAGAAAGCTACAATGTGAAAATCATGTTTGCTATTTAT
AAACCTATCCTTAGGTTAATGTATCTGGACAGACTGTGGGAGTAAGTGATTCTTCTAAGA
ATTAGATACTTGTCACTGCCTATACTTGCAGTTGAGCTGAATGGTACTTTGTATGTTAAT
AGGTGTTGTTCTGATAAATCATACAATTAAAGTGATGTATCATCTTGTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCGGGGGGAGTCCAGTTTGTATTAGGACATGTTTTGTGTTAAGCAGAACATATTTTAGA
AGAAAAAAAAAGTCAGTTAAAGGTTCTGGCCATTTCACCTGAATGAACAGTCACTCTGGG
CAAAACTTTTGTGATGTTTTGTTCTGTGGGATTTTGTGCTTACTACTGTATAATGCATGT
GGCACAGGATACTCTGGTTTTGTCGATGTAAACATTGAAAGTATTATATTTTTATAAAAA
TGTTTATTTTTAATGATACAAGAAAACTTTTGTTAGGACACAAAAATACTACACTGTGAA
CATTTCAGAAAAGGTATGTCAAACTTGGATTAATAACAGCATGATTCTAAATTGCTGTAA
ATAGTGATAAGGAAATGTCCTCACTGCCAAGACACCCCACCCTCATTACATCACCAGGAC
TTGAAGCCAAGGGTTAGCACAGCAGCTAAAACCCAGTGATAGAGTTGGGCTCTCATTGCA
GGAGAGTGATTACAACCCAAAGCTCTTTGACAACGGTGGAACTTACCAGAAGACATAAGG
AATTGTACTGCAGAGATATTCCTGATCACATATTACTCTTTCAGAAGTGTAAAGAGTAGT
ACTAATTCACAGAATGTTGTAAATGATGGATGAGGAAGAAAAAATCTGCTCTGCAAAAGA
ACTCTCTCTACTGGTATCAAGAGAATGAACACATCAAGTAGAGACAACCCATCAACAAGA
TTACACAACTGTATATATGCTTGAGAAAGCTACAATGTGAAAATCATGTTTGCTATTTAT
AAACCTATCCTTAGGTTAATGTATCTGGACAGACTGTGGGAGTAAGTGATTCTTCTAAGA
ATTAGATACTTGTCACTGCCTATACTTGCAGTTGAGCTGAATGGTACTTTGTATGTTAAT
AGGTGTTGTTCTGATAAATCATACAATTAAAGTGATGTATCATCTTGTAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-451, gnl|bosTau2|chr4 (26915563-26915107)
               

               
               2-451, gnl|Hg17|chr7 (116031394-116031852)
               

               
               2-451, gnl|Mm7|chr6 (17513453-17513900)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-451, gnl|bosTau2|chr4 (26915563-26915107)
               

               
               2-451, gnl|Hg17|chr7 (116031394-116031852)
               

               
               2-451, gnl|Mm7|chr6 (17513453-17513900)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               tra (0.492368)
               

               
               liv (0.292569)
               

               
               ret (0.257467)
               

               
               cmu (0.186393)
               

               
               rec (0.17307)
               

               
               eli (0.151814)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.492368)
               

               
               liv (0.292569)
               

               
               ret (0.257467)
               

               
               cmu (0.186393)
               

               
               rec (0.17307)
               

               
               eli (0.151814)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)

	2-451, gnl\|bosTau2\|chr4 (26915563-26915107)
	2-451, gnl\|Hg17\|chr7 (116031394-116031852)
	2-451, gnl\|Mm7\|chr6 (17513453-17513900)

	tra (0.492368)
	liv (0.292569)
	ret (0.257467)
	cmu (0.186393)
	rec (0.17307)
	eli (0.151814)
	ski (0.146735)
	csk (0.140746)
	pla (0.133672)
	lyg (0.133103)
	nmm (0.132802)
	kid (0.129735)