Non-Coding RNA Search

Ss1.1-ruio34_p9.5

Sequence:


               
               CTGCAAGAGCTGCTTACCAGGTTGCTGCTTTGCCCAAAGGAGGCCGTGTTGAGATTGAAG
CAATAGCCATCCAAGGACCTCTCGTGACCGCATCACTTTAAGTGGGCCCAGTGCTATTTA
GTCCAGAATTTTAATAACGTTTTTAAATTAATATCTTAATTTTTACAGTTGATGTTGGAA
AGTGTAAAGCCAACTGAAACATCTCAAGTTATTTTGGAGACACCATATAATAAGGGGAAC
TGAAGATTAATGATGAATCTGGTTAGCGATGTTATGAGTTAACTTAGGTAACACATGTAT
TATTGGGTGTGGGAAAAAGACACATGTATGACATAGTTGCTCAGATAAGTGAAAGTAAAG
GGAAATAACATGTAGGAAAGATGAAAAGTTACTATTCTTGAGAAATAAAGAGCACACCTA
AGTCAGTTAAACCCTATTAATTTAATGATGTGAAATATTTAGTCTCATGTCAGGTATATG
ATTCTGCTTTTACTTAAGTAAAATTTAAGTTTGAATGGTAGAGGTAAAGAAGAAGAAACT
GGACCAAAATTTTATATAGATAATATTTTTCTAATTTCTAGTGGGAATAATACAGCACGC
AGATTTCCCTTGGGGTGATTCCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCAAGAGCTGCTTACCAGGTTGCTGCTTTGCCCAAAGGAGGCCGTGTTGAGATTGAAG
CAATAGCCATCCAAGGACCTCTCGTGACCGCATCACTTTAAGTGGGCCCAGTGCTATTTA
GTCCAGAATTTTAATAACGTTTTTAAATTAATATCTTAATTTTTACAGTTGATGTTGGAA
AGTGTAAAGCCAACTGAAACATCTCAAGTTATTTTGGAGACACCATATAATAAGGGGAAC
TGAAGATTAATGATGAATCTGGTTAGCGATGTTATGAGTTAACTTAGGTAACACATGTAT
TATTGGGTGTGGGAAAAAGACACATGTATGACATAGTTGCTCAGATAAGTGAAAGTAAAG
GGAAATAACATGTAGGAAAGATGAAAAGTTACTATTCTTGAGAAATAAAGAGCACACCTA
AGTCAGTTAAACCCTATTAATTTAATGATGTGAAATATTTAGTCTCATGTCAGGTATATG
ATTCTGCTTTTACTTAAGTAAAATTTAAGTTTGAATGGTAGAGGTAAAGAAGAAGAAACT
GGACCAAAATTTTATATAGATAATATTTTTCTAATTTCTAGTGGGAATAATACAGCACGC
AGATTTCCCTTGGGGTGATTCCGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               UK14_CHICK

Coded protein: 1 entry(ies)

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Protein identifier


               
               UK14_CHICK

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               29-622, gnl|bosTau2|chr14 (39647274-39647820)
               

               
               29-622, gnl|canFam2|chr13 (3349146-3348795)
               

               
               29-622, gnl|dasNov1|scaffold_9384 (40405-40087)
               

               
               29-622, gnl|echTel1|scaffold_221847 (3046-3421)
               

               
               29-622, gnl|hg17|chr15 (55568415-55568770)
               

               
               29-622, gnl|Hg17|chr8 (99184320-99183734)
               

               
               29-622, gnl|loxAfr1|scaffold_16375 (52816-52464)
               

               
               29-622, gnl|Mm7|chr15 (34593535-34592993)
               

               
               29-622, gnl|mm7|chrX (19275307-19274999)
               

               
               29-622, gnl|monDom2|scaffold_45 (1171196-1171554)
               

               
               29-622, gnl|oryCun1|scaffold_150915 (19081-19409)
               

               
               29-622, gnl|panTro1|chr16 (55918878-55919233)
               

               
               29-622, gnl|rheMac2|chr7 (35823047-35823396)
               

               
               29-622, gnl|rn3|chrX (40834426-40834745)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               29-622, gnl|bosTau2|chr14 (39647274-39647820)
               

               
               29-622, gnl|canFam2|chr13 (3349146-3348795)
               

               
               29-622, gnl|dasNov1|scaffold_9384 (40405-40087)
               

               
               29-622, gnl|echTel1|scaffold_221847 (3046-3421)
               

               
               29-622, gnl|hg17|chr15 (55568415-55568770)
               

               
               29-622, gnl|Hg17|chr8 (99184320-99183734)
               

               
               29-622, gnl|loxAfr1|scaffold_16375 (52816-52464)
               

               
               29-622, gnl|Mm7|chr15 (34593535-34592993)
               

               
               29-622, gnl|mm7|chrX (19275307-19274999)
               

               
               29-622, gnl|monDom2|scaffold_45 (1171196-1171554)
               

               
               29-622, gnl|oryCun1|scaffold_150915 (19081-19409)
               

               
               29-622, gnl|panTro1|chr16 (55918878-55919233)
               

               
               29-622, gnl|rheMac2|chr7 (35823047-35823396)
               

               
               29-622, gnl|rn3|chrX (40834426-40834745)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               kid (0.908147)
               

               
               fat (0.147427)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.908147)
               

               
               fat (0.147427)

	29-622, gnl\|bosTau2\|chr14 (39647274-39647820)
	29-622, gnl\|canFam2\|chr13 (3349146-3348795)
	29-622, gnl\|dasNov1\|scaffold_9384 (40405-40087)
	29-622, gnl\|echTel1\|scaffold_221847 (3046-3421)
	29-622, gnl\|hg17\|chr15 (55568415-55568770)
	29-622, gnl\|Hg17\|chr8 (99184320-99183734)
	29-622, gnl\|loxAfr1\|scaffold_16375 (52816-52464)
	29-622, gnl\|Mm7\|chr15 (34593535-34592993)
	29-622, gnl\|mm7\|chrX (19275307-19274999)
	29-622, gnl\|monDom2\|scaffold_45 (1171196-1171554)
	29-622, gnl\|oryCun1\|scaffold_150915 (19081-19409)
	29-622, gnl\|panTro1\|chr16 (55918878-55919233)
	29-622, gnl\|rheMac2\|chr7 (35823047-35823396)
	29-622, gnl\|rn3\|chrX (40834426-40834745)