Non-Coding RNA Search

Ss1.1-ruio35_b13.5

Sequence:


               
               CCTGGAGGGGGTGATATTTGCATGTATCGTCATGCACTTCCTCCTGGATTTGTATTGAAA
AAAGATAAAAAGAAAGAAGAGAAAGAAGATGAAATTTCATTAGAAGATCTAATTGAAAGA
GAGCGTTCTGCCCTAGGTCCAAATGTTACCAAAATCACTCTAGAATCTTTTCTTGCATGG
AAGAAAAGAAAAAGACAAGAAAAGATTGATAAACTTGAGCAAGATATAGAAAGAAGGAAA
GCAGACTTCAAAGCAGGAAAGGCATTAGTGATCAGTGGTCGTGAGGTGTTTGAATTTCGT
CCTGAACTGGTTGATGATGATGATGAGGAAGCAGATGATACTCGTTACACCCAGGGAACA
GGTTGTGATGAGGTTGATGATTCAGTGAGCGTAAATGACATAGATTTAAGCCTGTATATC
CCAAGAGATGTAGATGAGACAGGTATTACTGTAGCCAGTCTTGAAAGATTCAGCACATAT
ACTTCAGAAAAGGATGAAAACAAATTAAGTGAAGCTTCCGGAGGTAAGGCTGAAAATGGT
GAAAGAAGTGATTTGGAAGAGGACAACGAAGGGGAGGGACAGGAAAATGGAGCCATCGAT
GCTGTTCCTGTTGATGAAAATCTTTTTACGGGGGAAGATTTGGATGAACTAGAAGAAGAA
TTAAACACACTTGATTTAGAAGAATGACACCAAACAAGTCATTGAAAAAATTAAGCCAGC
TCAGCATGAGTTGAAATTGACTACATTAATTATTTTCCACCTAGAATTCTTCAACAGGAT
GTTTTGTTTCCCATGCTGATTCTGGAGGGCTTATTCTCCTCCAAAAAGGAATATTTTCCC
TACATCTTGTCTTCTGACTTTGGCTACATCTCATAGTAAGTTCAGAGTAGTTCATGATAA
ATTAAAAATATAATGGTCATTGCAGAAAATAATTGATTGTTGTAACTGTCCCACTCAAGT
AGGAAGTATAACTGCTTTTCCAGCTTTTGATTTTCATTGGGCATGTGTTATTACAAGGAC
AACATAAATTTAAATTACCCTTCATTTAATGCAGTTTTTAATGAGTGATTTTATTTCCTT
TGTATTTATATGTTTAAAAGACTGCCTAAGATATGAGCCTGTACTTCATAAAGAAAACTG
CATATGCAGATTCAGTATTGTATATCTTTGGACAATTAAAAAGGAACTTCATTAATCTGA
CAGGATCAGCTGCAATGCCCTGTGTTAAGCTGTTTTAAACTTTTTCCTTTTCTTTTTTGC
CAATAAAGTTGTAAATAAAGACCATGATACATTAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGGAGGGGGTGATATTTGCATGTATCGTCATGCACTTCCTCCTGGATTTGTATTGAAA
AAAGATAAAAAGAAAGAAGAGAAAGAAGATGAAATTTCATTAGAAGATCTAATTGAAAGA
GAGCGTTCTGCCCTAGGTCCAAATGTTACCAAAATCACTCTAGAATCTTTTCTTGCATGG
AAGAAAAGAAAAAGACAAGAAAAGATTGATAAACTTGAGCAAGATATAGAAAGAAGGAAA
GCAGACTTCAAAGCAGGAAAGGCATTAGTGATCAGTGGTCGTGAGGTGTTTGAATTTCGT
CCTGAACTGGTTGATGATGATGATGAGGAAGCAGATGATACTCGTTACACCCAGGGAACA
GGTTGTGATGAGGTTGATGATTCAGTGAGCGTAAATGACATAGATTTAAGCCTGTATATC
CCAAGAGATGTAGATGAGACAGGTATTACTGTAGCCAGTCTTGAAAGATTCAGCACATAT
ACTTCAGAAAAGGATGAAAACAAATTAAGTGAAGCTTCCGGAGGTAAGGCTGAAAATGGT
GAAAGAAGTGATTTGGAAGAGGACAACGAAGGGGAGGGACAGGAAAATGGAGCCATCGAT
GCTGTTCCTGTTGATGAAAATCTTTTTACGGGGGAAGATTTGGATGAACTAGAAGAAGAA
TTAAACACACTTGATTTAGAAGAATGACACCAAACAAGTCATTGAAAAAATTAAGCCAGC
TCAGCATGAGTTGAAATTGACTACATTAATTATTTTCCACCTAGAATTCTTCAACAGGAT
GTTTTGTTTCCCATGCTGATTCTGGAGGGCTTATTCTCCTCCAAAAAGGAATATTTTCCC
TACATCTTGTCTTCTGACTTTGGCTACATCTCATAGTAAGTTCAGAGTAGTTCATGATAA
ATTAAAAATATAATGGTCATTGCAGAAAATAATTGATTGTTGTAACTGTCCCACTCAAGT
AGGAAGTATAACTGCTTTTCCAGCTTTTGATTTTCATTGGGCATGTGTTATTACAAGGAC
AACATAAATTTAAATTACCCTTCATTTAATGCAGTTTTTAATGAGTGATTTTATTTCCTT
TGTATTTATATGTTTAAAAGACTGCCTAAGATATGAGCCTGTACTTCATAAAGAAAACTG
CATATGCAGATTCAGTATTGTATATCTTTGGACAATTAAAAAGGAACTTCATTAATCTGA
CAGGATCAGCTGCAATGCCCTGTGTTAAGCTGTTTTAAACTTTTTCCTTTTCTTTTTTGC
CAATAAAGTTGTAAATAAAGACCATGATACATTAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8K346_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8K346_MOUSE

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-218, - strand, RNAz p=0.969325
               

               
               3-831, - strand, RNAz p=0.944072
               

               
               126-245, + strand, RNAz p=0.992392

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-218, - strand, RNAz p=0.969325
               

               
               3-831, - strand, RNAz p=0.944072
               

               
               126-245, + strand, RNAz p=0.992392

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-1308, gnl|bosTau2|chr3 (34561314-34559996)
               

               
               1-1308, gnl|Hg17|chr2 (187194325-187199594)
               

               
               1-1308, gnl|Mm7|chr8 (78651195-78649917)
               


               
               3-403, gnl|bosTau2|chr16 (18754616-18754225)
               

               
               3-403, gnl|Hg17|chr2 (187194327-187197015)
               

               
               3-403, gnl|Mm7|chr8 (78651193-78650753)
               


               
               496-1296, gnl|bosTau2|chr2 (4902498-4903309)
               

               
               496-1296, gnl|Hg17|chr2 (187198775-187199587)
               

               
               496-1296, gnl|Mm7|chr2 (83507535-83508332)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1308, gnl|bosTau2|chr3 (34561314-34559996)
               

               
               1-1308, gnl|Hg17|chr2 (187194325-187199594)
               

               
               1-1308, gnl|Mm7|chr8 (78651195-78649917)
               


               
               3-403, gnl|bosTau2|chr16 (18754616-18754225)
               

               
               3-403, gnl|Hg17|chr2 (187194327-187197015)
               

               
               3-403, gnl|Mm7|chr8 (78651193-78650753)
               


               
               496-1296, gnl|bosTau2|chr2 (4902498-4903309)
               

               
               496-1296, gnl|Hg17|chr2 (187198775-187199587)
               

               
               496-1296, gnl|Mm7|chr2 (83507535-83508332)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               liv (0.438853)
               

               
               clu (0.358938)
               

               
               sin (0.349895)
               

               
               vin (0.332557)
               

               
               kid (0.259471)
               

               
               tra (0.246184)
               

               
               fcc (0.197785)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.438853)
               

               
               clu (0.358938)
               

               
               sin (0.349895)
               

               
               vin (0.332557)
               

               
               kid (0.259471)
               

               
               tra (0.246184)
               

               
               fcc (0.197785)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	1-218, - strand, RNAz p=0.969325
	3-831, - strand, RNAz p=0.944072
	126-245, + strand, RNAz p=0.992392

	1-1308, gnl\|bosTau2\|chr3 (34561314-34559996)
	1-1308, gnl\|Hg17\|chr2 (187194325-187199594)
	1-1308, gnl\|Mm7\|chr8 (78651195-78649917)

	3-403, gnl\|bosTau2\|chr16 (18754616-18754225)
	3-403, gnl\|Hg17\|chr2 (187194327-187197015)
	3-403, gnl\|Mm7\|chr8 (78651193-78650753)

	496-1296, gnl\|bosTau2\|chr2 (4902498-4903309)
	496-1296, gnl\|Hg17\|chr2 (187198775-187199587)
	496-1296, gnl\|Mm7\|chr2 (83507535-83508332)

	liv (0.438853)
	clu (0.358938)
	sin (0.349895)
	vin (0.332557)
	kid (0.259471)
	tra (0.246184)
	fcc (0.197785)
	fhi (0.169578)
	tbr (0.154178)
	bfe (0.149858)
	fat (0.147427)
	spl (0.143184)
	ste (0.135208)
	nmm (0.132802)
	eru (0.120048)
	ebs (0.118301)
	med (0.116252)
	jca (0.11396)