Non-Coding RNA Search

Ss1.1-ruio35_h6.5

Sequence:


               
               AAGGACCGTGAATGTCAGAAATTACCCTCCGGGTCCCCGTGGCCTGTGGCCCCCAGTCGT
GTTCAGGAGTTTGGGGTGTAGGCCATGGCTCAGTGTTTTAGCACCTTGAGTCTCGGGGGA
AATGTGAACGCTTATATCTGATCCATTTCTAATCCGTTTGGCCTTCTGCTGCTTGAAGTC
ACTTTACTTAGGTGTAACTCGCCATCTGAGAATAAAAGCAGCTGCTTTTGATTTCCTGAA
AGATGAAACACTTGTACTATAATGTACTAAGAGTATTATTTATCTGGCAGTGAAATACTT
TGAGCATTTGCAAATATGCCATTGTCTGCTTTGCACTCAGTATTATCTATTTTTATTTCC
TATATGGATGTCTAGAAATTCTTTATATGAAAAATAATTGCTGGTTTAAAATAGACCATT
TTAACAAAGTAACTATATTTCTTTTTACAAAAATGCTATTTTTCTATGATGTAAACAATT
GTTGGGTGGCAGATTTTTAAGGAAGTTTATTGTATTTAAGAGTCTGTATCCCTTTGTGTT
AGAGGAACCCAGAGAGGGTTCACATCTGCTTTAAAGCACACACCCCTTCCCTGTTCATGA
CTCAGCTACTTTTATTTTATCTTAGAAAGAGATGTCAGTATAGTCATTTTTCAGGGTTAA
TAAAATTAACTTCTTTTCACCAAGATTTTCTTTCTACAAATGTAGCTGTAAGGTTATATT
GGAAAATAACCCTCTCAAAACCAGCCAACATCCTTACGACAAATTTTTGCTGCCATATCC
ACTAGAATAACCAAAAAACCCATAATTTCCTCTTTGTACGTCCATGGGGGTCTGCCCTGA
GACCATACCCTCCTCCCTGTCCCTTTTAAAGAGATACGTATTTTTATCTAGAATGATCCT
TAATTAGTGTCTGCATATTTTTAAAAAGCACTAGAGACATTGTATTATGCCATTACAAGA
AGTATTATGAGGCCTGTGTATTCTACTGTTTACTATTGCATTAACCTGCACAAAGTTTAT
GCATTTTCTTATGCATTTATCCCTTCTTTCTAAGTAAGTCGTTCTTATGAGCTAACATTT
CCTAAATGTTTTCTTGTTTTCTTCCTCCCTCAATCCCCCCTTCTTTTCCTCTCCCTTTTT
TCCCCTTTTATCTCTCTCTCTCTCTCTCTCTCAGAAGCCACCTAATCTATTTTTTAGCAT
TTCAGATGCCTAAAATGTGAACTGTTGGGTGGTCTGCAGTTTGGCCCTAAGACGACTCTG
GGCTTTCATGGCCTGTTTTTATCTGTACCATATGATCTTATTTCATCAGAACTTCATGTA
TTTGGATGGTAATAAACACCACGGAATCTAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGACCGTGAATGTCAGAAATTACCCTCCGGGTCCCCGTGGCCTGTGGCCCCCAGTCGT
GTTCAGGAGTTTGGGGTGTAGGCCATGGCTCAGTGTTTTAGCACCTTGAGTCTCGGGGGA
AATGTGAACGCTTATATCTGATCCATTTCTAATCCGTTTGGCCTTCTGCTGCTTGAAGTC
ACTTTACTTAGGTGTAACTCGCCATCTGAGAATAAAAGCAGCTGCTTTTGATTTCCTGAA
AGATGAAACACTTGTACTATAATGTACTAAGAGTATTATTTATCTGGCAGTGAAATACTT
TGAGCATTTGCAAATATGCCATTGTCTGCTTTGCACTCAGTATTATCTATTTTTATTTCC
TATATGGATGTCTAGAAATTCTTTATATGAAAAATAATTGCTGGTTTAAAATAGACCATT
TTAACAAAGTAACTATATTTCTTTTTACAAAAATGCTATTTTTCTATGATGTAAACAATT
GTTGGGTGGCAGATTTTTAAGGAAGTTTATTGTATTTAAGAGTCTGTATCCCTTTGTGTT
AGAGGAACCCAGAGAGGGTTCACATCTGCTTTAAAGCACACACCCCTTCCCTGTTCATGA
CTCAGCTACTTTTATTTTATCTTAGAAAGAGATGTCAGTATAGTCATTTTTCAGGGTTAA
TAAAATTAACTTCTTTTCACCAAGATTTTCTTTCTACAAATGTAGCTGTAAGGTTATATT
GGAAAATAACCCTCTCAAAACCAGCCAACATCCTTACGACAAATTTTTGCTGCCATATCC
ACTAGAATAACCAAAAAACCCATAATTTCCTCTTTGTACGTCCATGGGGGTCTGCCCTGA
GACCATACCCTCCTCCCTGTCCCTTTTAAAGAGATACGTATTTTTATCTAGAATGATCCT
TAATTAGTGTCTGCATATTTTTAAAAAGCACTAGAGACATTGTATTATGCCATTACAAGA
AGTATTATGAGGCCTGTGTATTCTACTGTTTACTATTGCATTAACCTGCACAAAGTTTAT
GCATTTTCTTATGCATTTATCCCTTCTTTCTAAGTAAGTCGTTCTTATGAGCTAACATTT
CCTAAATGTTTTCTTGTTTTCTTCCTCCCTCAATCCCCCCTTCTTTTCCTCTCCCTTTTT
TCCCCTTTTATCTCTCTCTCTCTCTCTCTCTCAGAAGCCACCTAATCTATTTTTTAGCAT
TTCAGATGCCTAAAATGTGAACTGTTGGGTGGTCTGCAGTTTGGCCCTAAGACGACTCTG
GGCTTTCATGGCCTGTTTTTATCTGTACCATATGATCTTATTTCATCAGAACTTCATGTA
TTTGGATGGTAATAAACACCACGGAATCTAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1121-1367, gnl|bosTau2|chr2 (45608126-45608372)
               

               
               1121-1367, gnl|Hg17|chr10 (30345360-30345036)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1121-1367, gnl|bosTau2|chr2 (45608126-45608372)
               

               
               1121-1367, gnl|Hg17|chr10 (30345360-30345036)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

Help | Less info


               
               fcc (0.39557)
               

               
               aor (0.390549)
               

               
               fbs (0.350693)
               

               
               ste (0.270416)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               hea (0.204499)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               aor (0.390549)
               

               
               fbs (0.350693)
               

               
               ste (0.270416)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               hea (0.204499)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)

	1121-1367, gnl\|bosTau2\|chr2 (45608126-45608372)
	1121-1367, gnl\|Hg17\|chr10 (30345360-30345036)

	fcc (0.39557)
	aor (0.390549)
	fbs (0.350693)
	ste (0.270416)
	ova (0.258264)
	sug (0.254582)
	hea (0.204499)
	fhi (0.169578)
	nco (0.161734)
	mga (0.160205)
	fco (0.157208)
	fat (0.147427)
	liv (0.146284)
	ssp (0.13552)
	kid (0.129735)