Non-Coding RNA Search

Ss1.1-rute2101b_i8.5

Sequence:


               
               AGTACCTGGACCCAGGAAAGAAGCATGAAGTGGCTTGTGATCCTTGGGCTGGTGGCCCTC
TCAGACTGCTTAGTCATGATCCCTCTCACGAAGGTCAAGTCCGTCCGAGAAAGCCTCAGA
GAAAAAGGCTTGCTGAAAAATTTCCTCAAGGAACATCCTTACAAAATGATCCAGAACCTG
AAAATCACTTCTCATCCACTGAGGAACTACCTGGATATGGTCTACGTGGGCAACATCACC
ATTGGAACACCCCCACAGCAGTTCAGTGTCGTCTTTGACACCGGCTCAGCTGACCTGTGG
GTGCCCTCCGTCTACTGCAAAAGCAAGGCCTGTGTTACACACAGATCCTTCAACCCTTCC
CACTCCAGCACCTTCCGCCTCCCGGGCATAAACTTCGAGTTGAAATACGGCTCTGGAAAG
ATTTCAGGATTCCTTGGCTATGACACTGTTCGGATCGGCAGTCTCATGACCATGAACCAG
ATATTTGGCCTGAGCCAGTTGGAGACCGGTGAGGCCTTTGAACATGGAGTCTTTGATGGA
GTCCTGGGCCTGGGCTTTCCCAGCCTCGCCCTCAAAAGAACCACCCCCATCTTCGACAAC
CTAAAGAAGCAAGGGCAAATTTCTGAGCCTGTCTTTGCCTTCTACCTGAGCACGAAGGAG
GAGGGCAGTGCAGTGATATTTGGTGGCGTGGACAGAAGCTTCTATAAAGGAGAGCTCAAG
TGGGTGCCCCTGACAAAACCCAACTACTGGCAGATCGCCTTGGACAGGATCACCTGGAGA
GGGCAAATTATTGGTTGTCCCCGCGGCTGCCAGGCCATCGTGGATACCGGGACCACGTAC
CTGATGGGCCCACACGCAGAGGTGGACAAAATCCATTCTCTCCTGAATGCAGTGCCCCTT
CAGAAAGAGTACGTGGTCCAGTGTAATGCCAGGGACACCTACCCTGACATCATCTTCACC
ATTAACAATGTCGACTACCCAGTGCCAGCTCATGCCTACATCCGAAAGGATGCTGCTAAT
AACCTCTGCTACAGCACCTTTGAGGGGATGGCGGATACTCTGACCAACAGCCATATCTGG
ATCCTGGGGCACATGTTCCTAAGGGTGTACTTCACCGTGTTCGATCGAGGACAGAACAGG
ATTGGCCTGGCTCGGGCCGCATAAATGCTGGGGCTGCTTCCAGAAACAACCAGGCCCACC
TCCCCAAACACACATTCCCTCACACCTAGGGCATTCCCGCCCAAGGAGGGTGGCTTGAAC
GGGGTTCAATGTTCTGCAAAGCCCAGTTCTCAGTAAAGAATAAAGGATTGCCTTTGCAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTACCTGGACCCAGGAAAGAAGCATGAAGTGGCTTGTGATCCTTGGGCTGGTGGCCCTC
TCAGACTGCTTAGTCATGATCCCTCTCACGAAGGTCAAGTCCGTCCGAGAAAGCCTCAGA
GAAAAAGGCTTGCTGAAAAATTTCCTCAAGGAACATCCTTACAAAATGATCCAGAACCTG
AAAATCACTTCTCATCCACTGAGGAACTACCTGGATATGGTCTACGTGGGCAACATCACC
ATTGGAACACCCCCACAGCAGTTCAGTGTCGTCTTTGACACCGGCTCAGCTGACCTGTGG
GTGCCCTCCGTCTACTGCAAAAGCAAGGCCTGTGTTACACACAGATCCTTCAACCCTTCC
CACTCCAGCACCTTCCGCCTCCCGGGCATAAACTTCGAGTTGAAATACGGCTCTGGAAAG
ATTTCAGGATTCCTTGGCTATGACACTGTTCGGATCGGCAGTCTCATGACCATGAACCAG
ATATTTGGCCTGAGCCAGTTGGAGACCGGTGAGGCCTTTGAACATGGAGTCTTTGATGGA
GTCCTGGGCCTGGGCTTTCCCAGCCTCGCCCTCAAAAGAACCACCCCCATCTTCGACAAC
CTAAAGAAGCAAGGGCAAATTTCTGAGCCTGTCTTTGCCTTCTACCTGAGCACGAAGGAG
GAGGGCAGTGCAGTGATATTTGGTGGCGTGGACAGAAGCTTCTATAAAGGAGAGCTCAAG
TGGGTGCCCCTGACAAAACCCAACTACTGGCAGATCGCCTTGGACAGGATCACCTGGAGA
GGGCAAATTATTGGTTGTCCCCGCGGCTGCCAGGCCATCGTGGATACCGGGACCACGTAC
CTGATGGGCCCACACGCAGAGGTGGACAAAATCCATTCTCTCCTGAATGCAGTGCCCCTT
CAGAAAGAGTACGTGGTCCAGTGTAATGCCAGGGACACCTACCCTGACATCATCTTCACC
ATTAACAATGTCGACTACCCAGTGCCAGCTCATGCCTACATCCGAAAGGATGCTGCTAAT
AACCTCTGCTACAGCACCTTTGAGGGGATGGCGGATACTCTGACCAACAGCCATATCTGG
ATCCTGGGGCACATGTTCCTAAGGGTGTACTTCACCGTGTTCGATCGAGGACAGAACAGG
ATTGGCCTGGCTCGGGCCGCATAAATGCTGGGGCTGCTTCCAGAAACAACCAGGCCCACC
TCCCCAAACACACATTCCCTCACACCTAGGGCATTCCCGCCCAAGGAGGGTGGCTTGAAC
GGGGTTCAATGTTCTGCAAAGCCCAGTTCTCAGTAAAGAATAAAGGATTGCCTTTGCAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|8896138|gb|AAF81254.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|8896138|gb|AAF81254.1|

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               207-376, gnl|bosTau2|chr29 (27936005-27935836)
               

               
               207-376, gnl|Hg17|chr11 (60730548-60730711)
               

               
               207-376, gnl|Mm7|chr19 (10355293-10355135)
               


               
               453-654, gnl|bosTau2|chr29 (30738096-30738297)
               

               
               453-654, gnl|Hg17|chr11 (60732338-60732539)
               

               
               453-654, gnl|Mm7|chr19 (10353963-10353762)
               


               
               1021-1309, gnl|bosTau2|chr29 (31200020-31199738)
               

               
               1021-1309, gnl|Mm7|chr19 (10349365-10349095)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               207-376, gnl|bosTau2|chr29 (27936005-27935836)
               

               
               207-376, gnl|Hg17|chr11 (60730548-60730711)
               

               
               207-376, gnl|Mm7|chr19 (10355293-10355135)
               


               
               453-654, gnl|bosTau2|chr29 (30738096-30738297)
               

               
               453-654, gnl|Hg17|chr11 (60732338-60732539)
               

               
               453-654, gnl|Mm7|chr19 (10353963-10353762)
               


               
               1021-1309, gnl|bosTau2|chr29 (31200020-31199738)
               

               
               1021-1309, gnl|Mm7|chr19 (10349365-10349095)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ute (6.77201)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (6.77201)

	207-376, gnl\|bosTau2\|chr29 (27936005-27935836)
	207-376, gnl\|Hg17\|chr11 (60730548-60730711)
	207-376, gnl\|Mm7\|chr19 (10355293-10355135)

	453-654, gnl\|bosTau2\|chr29 (30738096-30738297)
	453-654, gnl\|Hg17\|chr11 (60732338-60732539)
	453-654, gnl\|Mm7\|chr19 (10353963-10353762)

	1021-1309, gnl\|bosTau2\|chr29 (31200020-31199738)
	1021-1309, gnl\|Mm7\|chr19 (10349365-10349095)