Non-Coding RNA Search

Ss1.1-rute2103b_p11.5

Sequence:


               
               AGAGGCTCCGGAAGGGAGGGCTCCAAGCCCAGGTCTCTCTGGCTCTGGCATTCCCAAGTG
CTCACACCATCTGACCAAGGAACATCACTCCCCAAGAGAGAAACAGATTCGAGCAAGACC
GTGGGGGAGAAGGAGGATGGGGCTGCCACTGGATGGGGTTGGAGGGCCGTAGGGGACAAC
TCTCCAGCCATCTCTGTATCCCTGCCGAGGGCTGCAGAGACCGAAAGGTGACCTGCACCC
CCTGAAGGCCAAGAGCATCGGCCTGGCTAGAGCAGGAGACCCCAGATTTGCTGAAGGAGG
TTCTGTGGAGGCCATGTCATTATCGGGCCCCCGGGTATAATCTGGGCCCTGCCTCTGCCC
TTGGGGTAACACTAAGCAGAAATTTGCCCCATTTTCTTTCCAGAGTCTCTTTTGTGTCTG
TCACTTCTCTTTCAAAAAGGCGGTGTTTTTTGTTGTTGTTGGCTTTTTTTTTTTTTTAAA
GAAAAGTTCTTAAAAACACTAACGGAAACCCATGGAGTTTGTCCTTTGTAAAAATTTTAA
ACACAGTGTCTTGATATAAAAATAAAAAAATCCAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGGCTCCGGAAGGGAGGGCTCCAAGCCCAGGTCTCTCTGGCTCTGGCATTCCCAAGTG
CTCACACCATCTGACCAAGGAACATCACTCCCCAAGAGAGAAACAGATTCGAGCAAGACC
GTGGGGGAGAAGGAGGATGGGGCTGCCACTGGATGGGGTTGGAGGGCCGTAGGGGACAAC
TCTCCAGCCATCTCTGTATCCCTGCCGAGGGCTGCAGAGACCGAAAGGTGACCTGCACCC
CCTGAAGGCCAAGAGCATCGGCCTGGCTAGAGCAGGAGACCCCAGATTTGCTGAAGGAGG
TTCTGTGGAGGCCATGTCATTATCGGGCCCCCGGGTATAATCTGGGCCCTGCCTCTGCCC
TTGGGGTAACACTAAGCAGAAATTTGCCCCATTTTCTTTCCAGAGTCTCTTTTGTGTCTG
TCACTTCTCTTTCAAAAAGGCGGTGTTTTTTGTTGTTGTTGGCTTTTTTTTTTTTTTAAA
GAAAAGTTCTTAAAAACACTAACGGAAACCCATGGAGTTTGTCCTTTGTAAAAATTTTAA
ACACAGTGTCTTGATATAAAAATAAAAAAATCCAGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               158-276, + strand, RNAz p=0.919543

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               158-276, + strand, RNAz p=0.919543

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               160-259, + strand, RNAmicro p=0.993447

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               160-259, + strand, RNAmicro p=0.993447

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_018977, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_018977, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-576, gnl|bosTau2|chrX (21954724-21955282)
               

               
               1-576, gnl|Hg17|chrX (70173493-70174060)
               

               
               1-576, gnl|Mm7|chrX (96648105-96648693)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-576, gnl|bosTau2|chrX (21954724-21955282)
               

               
               1-576, gnl|Hg17|chrX (70173493-70174060)
               

               
               1-576, gnl|Mm7|chrX (96648105-96648693)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               fce (0.271592)
               

               
               ute (0.132784)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               ute (0.132784)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	1-576, gnl\|bosTau2\|chrX (21954724-21955282)
	1-576, gnl\|Hg17\|chrX (70173493-70174060)
	1-576, gnl\|Mm7\|chrX (96648105-96648693)

	fce (0.271592)
	ute (0.132784)
	eru (0.120048)
	ecc (0.115035)
	cty (0.10408)