Non-Coding RNA Search

Ss1.1-rute2105b_o16.5

Sequence:


               
               GGCTGGCCCCACTGGACTGCATCTGTTCAAGCCACATGCAGTCAGGCCACTCTGGCCAGC
ACAGGGCCTGCTCTGTCCTTGGCTGACTGTCCTCCTGGAATGTGAGGTGGCAAGGCCCAG
AAGACAGAACTGGACAGCCCCCAGGCAAGGGGCTGCTGTGGACATGTGGCAAGCCCAAGG
ATGGGAGTCAGGGAGCTGGGGCCATCGCAGGACACTTCTGGAGGGATGAGGAGATGCCTG
CCTTCTGCCAGCGCAGCAGCATCCTGGCCTTCTATGCTGCCCACCCTGAGTGACCCGTGA
CCTCTGCACTTCCTGACCCAGGACAGTAGATCATCAGTGACGCTGTGGGCCCCCCACCAT
GGCCACTGACTCAGGCCTCATGCTTTCTACCAGCAGTAACTAGGCAGGGTCCTAGTCTCT
CTTTGGGGGTCTGAGCCCCTACTTTTCTAAGTACAAAGGACCAATAAAGCTGATGCTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTGGCCCCACTGGACTGCATCTGTTCAAGCCACATGCAGTCAGGCCACTCTGGCCAGC
ACAGGGCCTGCTCTGTCCTTGGCTGACTGTCCTCCTGGAATGTGAGGTGGCAAGGCCCAG
AAGACAGAACTGGACAGCCCCCAGGCAAGGGGCTGCTGTGGACATGTGGCAAGCCCAAGG
ATGGGAGTCAGGGAGCTGGGGCCATCGCAGGACACTTCTGGAGGGATGAGGAGATGCCTG
CCTTCTGCCAGCGCAGCAGCATCCTGGCCTTCTATGCTGCCCACCCTGAGTGACCCGTGA
CCTCTGCACTTCCTGACCCAGGACAGTAGATCATCAGTGACGCTGTGGGCCCCCCACCAT
GGCCACTGACTCAGGCCTCATGCTTTCTACCAGCAGTAACTAGGCAGGGTCCTAGTCTCT
CTTTGGGGGTCTGAGCCCCTACTTTTCTAAGTACAAAGGACCAATAAAGCTGATGCTTCT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-93, - strand, RNAz p=0.790848
               

               
               380-480, - strand, RNAz p=0.81759

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-93, - strand, RNAz p=0.790848
               

               
               380-480, - strand, RNAz p=0.81759

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-480, gnl|bosTau2|chr2 (55346962-55346485)
               

               
               1-480, gnl|Hg17|chr9 (92963957-92963348)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-480, gnl|bosTau2|chr2 (55346962-55346485)
               

               
               1-480, gnl|Hg17|chr9 (92963957-92963348)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cli (0.152812)
               

               
               ute (0.132784)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.152812)
               

               
               ute (0.132784)

	1-93, - strand, RNAz p=0.790848
	380-480, - strand, RNAz p=0.81759

	1-480, gnl\|bosTau2\|chr2 (55346962-55346485)
	1-480, gnl\|Hg17\|chr9 (92963957-92963348)