Non-Coding RNA Search

Ss1.1-rute2106b_g3.5

Sequence:


               
               AATAAAGTGTCACTGATTTACTCTCCAAAATGGGAAGACACCCAGTAATGAACATGCTGC
TGTCTGGGTTCCTGACTCTGAGGCAACTGTATGTATGCGTTGTCAGAAAGCAAAATTCAC
ACCTGTTAATCGTCGTCACCATTGCCGCAAATGTGGTTTTGTTGTCTGTGGGCCCTGCTA
CTAAAAAGAGGTTTCTTCTTCCCAGCCAGTCCTCTAAGCCTGTGCGGATTTGTGACTTCT
GCTATGACCTGCTTTCTACTGGGGACATGGCCACGTGCCAGCCCACTAGATCGGACTCCT
ACAGTCAGTCATTGAAATCTCCATTAAATGATGTATCTGATGATGATGATGATGATGATA
GCAGTGACTAAGGACATATTTTGACATATTTAATCCGGTGTGACTTTCTGAGAAATTAGC
TCTGGGGGGAATGTGAAATTCTGAGCTTTCTCTCAGTTTTGCTCTAGCCATGAATTTGCC
TGAGAAACTTTTAACCTATGTGCCTCAGTATATTCTATAGAAAATAGGTCCTGATATCAT
CCACCCCCACCGCCCCTCAGCTGCTGCCACTCTCTTCTCACCTCTCCCAGCTCCCTAGTC
TTCTGCAGGGATAGGCTATTGCAAATATATCAGATAAATTTTTGGTTTCTTCTTCTTGTT
TTAATTCTAGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATAAAGTGTCACTGATTTACTCTCCAAAATGGGAAGACACCCAGTAATGAACATGCTGC
TGTCTGGGTTCCTGACTCTGAGGCAACTGTATGTATGCGTTGTCAGAAAGCAAAATTCAC
ACCTGTTAATCGTCGTCACCATTGCCGCAAATGTGGTTTTGTTGTCTGTGGGCCCTGCTA
CTAAAAAGAGGTTTCTTCTTCCCAGCCAGTCCTCTAAGCCTGTGCGGATTTGTGACTTCT
GCTATGACCTGCTTTCTACTGGGGACATGGCCACGTGCCAGCCCACTAGATCGGACTCCT
ACAGTCAGTCATTGAAATCTCCATTAAATGATGTATCTGATGATGATGATGATGATGATA
GCAGTGACTAAGGACATATTTTGACATATTTAATCCGGTGTGACTTTCTGAGAAATTAGC
TCTGGGGGGAATGTGAAATTCTGAGCTTTCTCTCAGTTTTGCTCTAGCCATGAATTTGCC
TGAGAAACTTTTAACCTATGTGCCTCAGTATATTCTATAGAAAATAGGTCCTGATATCAT
CCACCCCCACCGCCCCTCAGCTGCTGCCACTCTCTTCTCACCTCTCCCAGCTCCCTAGTC
TTCTGCAGGGATAGGCTATTGCAAATATATCAGATAAATTTTTGGTTTCTTCTTCTTGTT
TTAATTCTAGAC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-654, gnl|bosTau2|chr14 (43146593-43147230)
               

               
               1-654, gnl|Hg17|chr8 (96235827-96236438)
               

               
               1-654, gnl|Mm7|chr4 (10918109-10917531)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-654, gnl|bosTau2|chr14 (43146593-43147230)
               

               
               1-654, gnl|Hg17|chr8 (96235827-96236438)
               

               
               1-654, gnl|Mm7|chr4 (10918109-10917531)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nlu (0.191681)
               

               
               ute (0.132784)
               

               
               kid (0.129735)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               ute (0.132784)
               

               
               kid (0.129735)

	1-654, gnl\|bosTau2\|chr14 (43146593-43147230)
	1-654, gnl\|Hg17\|chr8 (96235827-96236438)
	1-654, gnl\|Mm7\|chr4 (10918109-10917531)