Non-Coding RNA Search

Ss1.1-rute2106b_o24.5

Sequence:


               
               TTCCTGAGTACCTGGACCCAGGAAAGAAGCATGAAGTGGCTTGTGATCCTTGGGCTGGTG
GCCCTCTCAGACTGCTTAGTCATGATCCCTCTCATGAAGGTCAAGTCCGTCCGAGAAAGC
CTCAGAGAAAAAGGCTTGCTGAAAAATTTCCTCAAGGAACATCCTTACAAAATGATCCAG
AACCTGAAAATCACTTCTCATCCACTGAGGAACTACCTGGATATGACCTACGTGGGCAAC
ATCACCATTGGCACACCCCCACAGCAGTTCAGCGTCATGTTTGACACCGGCTCAGCTGAC
CTGTGGGTGCCCTCCGTCTACTGCAAAAGCAAGGCCTGTGTTACACACAGGTCCTTCAAC
CCTTCCCACTCCAGCACCTTCCGCCTCCCGGGCAAAAACTTCGAGTTGCAATACGGCTCT
GGAAAGATTTCAGGATTCCTTGGCTATGACACTGTTTGGATCGGCAGTCTCAGGATCATG
AACCAGGTATTTGGCCTGAGCCAGTTGGAGACCGGTGAGGCCTTTGAACATGGAGTCTTT
GATGGAGTCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCTGAGTACCTGGACCCAGGAAAGAAGCATGAAGTGGCTTGTGATCCTTGGGCTGGTG
GCCCTCTCAGACTGCTTAGTCATGATCCCTCTCATGAAGGTCAAGTCCGTCCGAGAAAGC
CTCAGAGAAAAAGGCTTGCTGAAAAATTTCCTCAAGGAACATCCTTACAAAATGATCCAG
AACCTGAAAATCACTTCTCATCCACTGAGGAACTACCTGGATATGACCTACGTGGGCAAC
ATCACCATTGGCACACCCCCACAGCAGTTCAGCGTCATGTTTGACACCGGCTCAGCTGAC
CTGTGGGTGCCCTCCGTCTACTGCAAAAGCAAGGCCTGTGTTACACACAGGTCCTTCAAC
CCTTCCCACTCCAGCACCTTCCGCCTCCCGGGCAAAAACTTCGAGTTGCAATACGGCTCT
GGAAAGATTTCAGGATTCCTTGGCTATGACACTGTTTGGATCGGCAGTCTCAGGATCATG
AACCAGGTATTTGGCCTGAGCCAGTTGGAGACCGGTGAGGCCTTTGAACATGGAGTCTTT
GATGGAGTCCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|28189935|dbj|BAC56582.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|28189935|dbj|BAC56582.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               213-382, gnl|bosTau2|chr29 (27936005-27935836)
               

               
               213-382, gnl|Hg17|chr11 (60730548-60730711)
               

               
               213-382, gnl|Mm7|chr19 (10355293-10355135)
               


               
               216-324, gnl|bosTau2|chr29 (31206485-31206377)
               

               
               216-324, gnl|Hg17|chr11 (60730555-60730659)
               

               
               216-324, gnl|Mm7|chr19 (10355293-10355185)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               213-382, gnl|bosTau2|chr29 (27936005-27935836)
               

               
               213-382, gnl|Hg17|chr11 (60730548-60730711)
               

               
               213-382, gnl|Mm7|chr19 (10355293-10355135)
               


               
               216-324, gnl|bosTau2|chr29 (31206485-31206377)
               

               
               216-324, gnl|Hg17|chr11 (60730555-60730659)
               

               
               216-324, gnl|Mm7|chr19 (10355293-10355185)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ute (1.19506)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (1.19506)

	213-382, gnl\|bosTau2\|chr29 (27936005-27935836)
	213-382, gnl\|Hg17\|chr11 (60730548-60730711)
	213-382, gnl\|Mm7\|chr19 (10355293-10355135)

	216-324, gnl\|bosTau2\|chr29 (31206485-31206377)
	216-324, gnl\|Hg17\|chr11 (60730555-60730659)
	216-324, gnl\|Mm7\|chr19 (10355293-10355185)