Non-Coding RNA Search

Ss1.1-rute2107b_o22.5

Sequence:


               
               CTTCTTTCTTTTTTTTTGGGGGGGGGCAGGGGATGTTCTTTGTATTGTTTATTTCATTTT
GGGTGATTTTAAAAGATGTAAACATATATTAAGCTATATTAAATCTCACATATAGTTCTC
CGTGCTCTATTGTGCCCTGATAGAGATGGAGAAGAGAAAGGGATGTTTCTGATGGTGGTT
TCAACGTGTGAACAGTTACTAGCTCATGCCCATAGAGAGTTGGTGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCTTTCTTTTTTTTTGGGGGGGGGCAGGGGATGTTCTTTGTATTGTTTATTTCATTTT
GGGTGATTTTAAAAGATGTAAACATATATTAAGCTATATTAAATCTCACATATAGTTCTC
CGTGCTCTATTGTGCCCTGATAGAGATGGAGAAGAGAAAGGGATGTTTCTGATGGTGGTT
TCAACGTGTGAACAGTTACTAGCTCATGCCCATAGAGAGTTGGTGTCC

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               2-228, gnl|bosTau2|chr11 (23505429-23505195)
               

               
               2-228, gnl|canFam2|chr10 (51588339-51588713)
               

               
               2-228, gnl|galGal2|chr3 (22833150-22833468)
               

               
               2-228, gnl|hg17|chr2 (46325111-46325488)
               

               
               2-228, gnl|Hg17|chr2 (46325353-46325577)
               

               
               2-228, gnl|loxAfr1|scaffold_13059 (35773-35400)
               

               
               2-228, gnl|mm7|chr17 (84958608-84958971)
               

               
               2-228, gnl|Mm7|chr17 (84958858-84959057)
               

               
               2-228, gnl|monDom2|scaffold_1 (5752551-5752888)
               

               
               2-228, gnl|oryCun1|scaffold_210154 (90135-89777)
               

               
               2-228, gnl|panTro1|chr12 (48242316-48242697)
               

               
               2-228, gnl|rheMac2|chr13 (46304222-46304599)
               

               
               2-228, gnl|rn3|chr6 (10098397-10098761)
               

               
               2-228, gnl|xenTro1|scaffold_462 (81384-81684)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-228, gnl|bosTau2|chr11 (23505429-23505195)
               

               
               2-228, gnl|canFam2|chr10 (51588339-51588713)
               

               
               2-228, gnl|galGal2|chr3 (22833150-22833468)
               

               
               2-228, gnl|hg17|chr2 (46325111-46325488)
               

               
               2-228, gnl|Hg17|chr2 (46325353-46325577)
               

               
               2-228, gnl|loxAfr1|scaffold_13059 (35773-35400)
               

               
               2-228, gnl|mm7|chr17 (84958608-84958971)
               

               
               2-228, gnl|Mm7|chr17 (84958858-84959057)
               

               
               2-228, gnl|monDom2|scaffold_1 (5752551-5752888)
               

               
               2-228, gnl|oryCun1|scaffold_210154 (90135-89777)
               

               
               2-228, gnl|panTro1|chr12 (48242316-48242697)
               

               
               2-228, gnl|rheMac2|chr13 (46304222-46304599)
               

               
               2-228, gnl|rn3|chr6 (10098397-10098761)
               

               
               2-228, gnl|xenTro1|scaffold_462 (81384-81684)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ute (0.132784)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.132784)

	2-228, gnl\|bosTau2\|chr11 (23505429-23505195)
	2-228, gnl\|canFam2\|chr10 (51588339-51588713)
	2-228, gnl\|galGal2\|chr3 (22833150-22833468)
	2-228, gnl\|hg17\|chr2 (46325111-46325488)
	2-228, gnl\|Hg17\|chr2 (46325353-46325577)
	2-228, gnl\|loxAfr1\|scaffold_13059 (35773-35400)
	2-228, gnl\|mm7\|chr17 (84958608-84958971)
	2-228, gnl\|Mm7\|chr17 (84958858-84959057)
	2-228, gnl\|monDom2\|scaffold_1 (5752551-5752888)
	2-228, gnl\|oryCun1\|scaffold_210154 (90135-89777)
	2-228, gnl\|panTro1\|chr12 (48242316-48242697)
	2-228, gnl\|rheMac2\|chr13 (46304222-46304599)
	2-228, gnl\|rn3\|chr6 (10098397-10098761)
	2-228, gnl\|xenTro1\|scaffold_462 (81384-81684)