Non-Coding RNA Search

Ss1.1-rute2109b_a3.5

Sequence:


               
               GGCCTAAGGGCGGAGCCTGGGGCAGGTGGGACACTTGCAGTAACGCCGCGCGCGCTGGAG
CCCCGAGGCTCGCAGAGGCTGCTGAGGCCCCCACAGGTGGCCCCTTCCTTCAGGCTGAGG
CGTCCTGGACCTTTTGGGCGTCTCTCTCTAGGTGACCCCCGAAGGGTGTCCTGAAACTCA
ACCAGGTGGCTCTGCAGTGGTGACAACAGATGGAGTCCCACCCATCCCTGGCCAAGCTGC
TCCCAAGATCATGACGCCCTCAGAGTCATCTTTGACTCACTGAACAATCAGTTATCAACT
GCTCACTGTTTGCCAGATACTGAGACGGCTCCTGGGCACACAGAAAAGAGCCAGGCCTGA
TCTCATCCCAGAGCTCAGCCTAGCGCAGGTCGCCTTTCCCAACTCAGCAGTACTGTGGTT
GCCAAGGCTGCTCTTTAACAATGCCTGTTCCTGGGTCTCACCGCAGAGATGCTAATTCAC
AAGACACCCATGGGACACGGTTGTCAAGGCTGCCATGAGGAAGTACCCAAATCCGATGAA
CCCCTGTGTCGTGGGCGTCGATGTGCTGGAGCGCAGTGTGGACGCCCGGGGCCGGCTCCA
CAGCCACCGGCTCCTCAGCACCGAGTGGGGGCTGCCCGGCCTCGTGAAAGCGATCTTGGG
AACCAGTAGGACTTTGACATACATCAGAGAACGTTCAATTGTGGACCCAGTGGGGAAGAA
GATGGAGCTCTGCTCCACCAATGTAAGCAGTGGCCACGATGAGCAAGATCACACTCACCA
ACTTGGTGTTGGTGAGCGAGAGGCTGGTGTACACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCTAAGGGCGGAGCCTGGGGCAGGTGGGACACTTGCAGTAACGCCGCGCGCGCTGGAG
CCCCGAGGCTCGCAGAGGCTGCTGAGGCCCCCACAGGTGGCCCCTTCCTTCAGGCTGAGG
CGTCCTGGACCTTTTGGGCGTCTCTCTCTAGGTGACCCCCGAAGGGTGTCCTGAAACTCA
ACCAGGTGGCTCTGCAGTGGTGACAACAGATGGAGTCCCACCCATCCCTGGCCAAGCTGC
TCCCAAGATCATGACGCCCTCAGAGTCATCTTTGACTCACTGAACAATCAGTTATCAACT
GCTCACTGTTTGCCAGATACTGAGACGGCTCCTGGGCACACAGAAAAGAGCCAGGCCTGA
TCTCATCCCAGAGCTCAGCCTAGCGCAGGTCGCCTTTCCCAACTCAGCAGTACTGTGGTT
GCCAAGGCTGCTCTTTAACAATGCCTGTTCCTGGGTCTCACCGCAGAGATGCTAATTCAC
AAGACACCCATGGGACACGGTTGTCAAGGCTGCCATGAGGAAGTACCCAAATCCGATGAA
CCCCTGTGTCGTGGGCGTCGATGTGCTGGAGCGCAGTGTGGACGCCCGGGGCCGGCTCCA
CAGCCACCGGCTCCTCAGCACCGAGTGGGGGCTGCCCGGCCTCGTGAAAGCGATCTTGGG
AACCAGTAGGACTTTGACATACATCAGAGAACGTTCAATTGTGGACCCAGTGGGGAAGAA
GATGGAGCTCTGCTCCACCAATGTAAGCAGTGGCCACGATGAGCAAGATCACACTCACCA
ACTTGGTGTTGGTGAGCGAGAGGCTGGTGTACACAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26336234|dbj|BAC31802.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26336234|dbj|BAC31802.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               165-483, gnl|bosTau2|chr24 (29176262-29175943)
               

               
               165-483, gnl|Hg17|chr18 (12384078-12384419)
               


               
               485-709, gnl|bosTau2|chr13 (60426503-60426727)
               

               
               485-709, gnl|Hg17|chr7 (126529658-126529891)
               

               
               485-709, gnl|Mm7|chr2 (174213898-174212715)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               165-483, gnl|bosTau2|chr24 (29176262-29175943)
               

               
               165-483, gnl|Hg17|chr18 (12384078-12384419)
               


               
               485-709, gnl|bosTau2|chr13 (60426503-60426727)
               

               
               485-709, gnl|Hg17|chr7 (126529658-126529891)
               

               
               485-709, gnl|Mm7|chr2 (174213898-174212715)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ute (0.132784)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.132784)
               

               
               ebs (0.118301)

	165-483, gnl\|bosTau2\|chr24 (29176262-29175943)
	165-483, gnl\|Hg17\|chr18 (12384078-12384419)

	485-709, gnl\|bosTau2\|chr13 (60426503-60426727)
	485-709, gnl\|Hg17\|chr7 (126529658-126529891)
	485-709, gnl\|Mm7\|chr2 (174213898-174212715)