Non-Coding RNA Search

Ss1.1-rute2112b_i10.5

Sequence:


               
               TGGTCAGGTTGTAGCACACTCTCGATTCGTCTTTTTGATGCTTTTAATACCATGACGTCC
GTGAGTACCGACTTCCCGAAGTTCCGTATCAGAATTCATCCTCTTAAACACAGATCTTTG
CTTAGTTAGTGTATCTCTTAGTTTCTGACGTGGCGTGCCTATAGAATAGTTTTTTAATTT
AAACCCTGCAGCTCTTATTATCTGGTAAGGGTCCAAGTTGAGGAGTCTACATTGACGTGT
ACCCAGATGAGGTTATGTTGTGTGCACTGAGGGATCCAGATTTTTAAAGAAAGACCTGCT
GCTGAGAAAACCGGAGCTTTGCAATGCGCCATATACATAAGCTAGACAGAAGACATGATG
TAGAAAGTTTAAACTCTTTGAAGCACTGGGAAGTTGCAACCTGTAGAATTAGACTCCCCG
CATTCAGTAGGATAGCAGAGAAGTAAATTGCGGTGATGTGCTTTCATTGAAATGTCCTGT
CTCCAGCATCCTCTGGTCCAAGTGGATTCGTTTGTTCTGCAGAAGTAATTTTCTATTCCG
TTGCCGGTATGACATTTTCGTGATGCTGAAGTAATTTGGACTTAGTAACCTTTCTTACCA
AGTCGCTTTATGGTTTACAAATAATACTGATGCAAAGAGGGTGTGTTAACTTCTTGAATT
AAGTAGCACGTGCTTTGTTTACCTGCTTCATTTGATTGTGGGGTAACCGTGGGGTTGATC
CCGTTTCACGAGCACAGGGTTTGTGCTTTGGGGACATACTGCAATTGTGCTGTTCTCTTG
TACCAAGGATCAGTGAAAGTGTTTTATCTTTTTTATGTAGTTTGTATCGACGGGCTTTTA
TAACTGTAAGAAAACAGAAACAGAGTGTTGTATTTTGATCTGAAATTTGTCTATGGTAAA
GTAAATTTTGTTTTATGTATCGGAAGTTCATTTAAAACTTGAAATATTTTCTAGAAGGGT
ACCGAACAAGAGAATCGTCTTTAAGCTGTTTAATTCGCCTAATAAAACACTTCGATGGGG
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGTCAGGTTGTAGCACACTCTCGATTCGTCTTTTTGATGCTTTTAATACCATGACGTCC
GTGAGTACCGACTTCCCGAAGTTCCGTATCAGAATTCATCCTCTTAAACACAGATCTTTG
CTTAGTTAGTGTATCTCTTAGTTTCTGACGTGGCGTGCCTATAGAATAGTTTTTTAATTT
AAACCCTGCAGCTCTTATTATCTGGTAAGGGTCCAAGTTGAGGAGTCTACATTGACGTGT
ACCCAGATGAGGTTATGTTGTGTGCACTGAGGGATCCAGATTTTTAAAGAAAGACCTGCT
GCTGAGAAAACCGGAGCTTTGCAATGCGCCATATACATAAGCTAGACAGAAGACATGATG
TAGAAAGTTTAAACTCTTTGAAGCACTGGGAAGTTGCAACCTGTAGAATTAGACTCCCCG
CATTCAGTAGGATAGCAGAGAAGTAAATTGCGGTGATGTGCTTTCATTGAAATGTCCTGT
CTCCAGCATCCTCTGGTCCAAGTGGATTCGTTTGTTCTGCAGAAGTAATTTTCTATTCCG
TTGCCGGTATGACATTTTCGTGATGCTGAAGTAATTTGGACTTAGTAACCTTTCTTACCA
AGTCGCTTTATGGTTTACAAATAATACTGATGCAAAGAGGGTGTGTTAACTTCTTGAATT
AAGTAGCACGTGCTTTGTTTACCTGCTTCATTTGATTGTGGGGTAACCGTGGGGTTGATC
CCGTTTCACGAGCACAGGGTTTGTGCTTTGGGGACATACTGCAATTGTGCTGTTCTCTTG
TACCAAGGATCAGTGAAAGTGTTTTATCTTTTTTATGTAGTTTGTATCGACGGGCTTTTA
TAACTGTAAGAAAACAGAAACAGAGTGTTGTATTTTGATCTGAAATTTGTCTATGGTAAA
GTAAATTTTGTTTTATGTATCGGAAGTTCATTTAAAACTTGAAATATTTTCTAGAAGGGT
ACCGAACAAGAGAATCGTCTTTAAGCTGTTTAATTCGCCTAATAAAACACTTCGATGGGG
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               9-1022, gnl|bosTau2|chr18 (7374819-7373813)
               

               
               9-1022, gnl|Hg17|chr16 (79980972-79981911)
               

               
               9-1022, gnl|Mm7|chr8 (115828620-115829495)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-1022, gnl|bosTau2|chr18 (7374819-7373813)
               

               
               9-1022, gnl|Hg17|chr16 (79980972-79981911)
               

               
               9-1022, gnl|Mm7|chr8 (115828620-115829495)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               ski (0.29347)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               fhi (0.169578)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.29347)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               fhi (0.169578)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)

	9-1022, gnl\|bosTau2\|chr18 (7374819-7373813)
	9-1022, gnl\|Hg17\|chr16 (79980972-79981911)
	9-1022, gnl\|Mm7\|chr8 (115828620-115829495)

	ski (0.29347)
	fcc (0.197785)
	sag (0.182715)
	fhi (0.169578)
	liv (0.146284)
	csk (0.140746)
	ute (0.132784)
	ret (0.128733)
	cbl (0.114797)
	nbm (0.0993246)