Non-Coding RNA Search

Ss1.1-rute2112b_i20.5

Sequence:


               
               TCAGGTTCTCAGTCCTGCCCCTTGGTGCCCTCTCGTCTGCTCCCTCACTCTGCACACCCA
CCCACACACGCCAGTCCTTCCCCATCTGGTCTCTGGAGGTAGGGTTAGGACTGTTTAACC
TCTCTTCCCACACCTCTGCAGATGCTGGGGGTCTGGGACATGAGCAGCCGTCTCCCCTGT
ACAATTCTGTTTTCTCTGACCGAGTCATTTGGTCGTATTTCCTCCCCATCCAGTTCCCTG
TCAGAGTCAATCAGGCCCTTCTTCTTTCGAGCTCCTTTGCCTGTGGAACACTGTCTGGTC
CTACTGTGGTTCCCATCACTCCCCACCCCCCACCCCCCCAGGTTAACCTTGTGCCTGTCT
CATGAATGATCACATCACCAAAAAGGGGGGCAAGAAGGACTTTTTTTTTTTTTTTTCCAT
GTAATCGTATAATAAAAATAGTAGACAAACTGCTTAATGGTCGGGGTTTTTTCACAATTT
TCAACATTAGTGTTTTTTTTTTTTTTTTGATTCTGTTTGCAAGTTAAAGGTTTGTCATTG
TTTCTTTAAAAAACAATAATGCACCATATCCCTATGCATAAAGTGCTTCTTCTATTTATA
AGGTTGAAAATTCTGAATAACCCTTTTAGCATTGTAAAAAAAAAAACCAAAAAAAACAAA
AAAACAAAAATGGAAAAAAAAAACCCTTGTATTTTGTAAATATTTTCTTTTCCTGCTTTG
AGCTGTGTATTGGCAGCGGAACATGTAGCTGTCTTTGTTCTATAGAAATGCTTTTCTTCA
GAGAAGCTGATCTTTGTTAATGTCTTGATTCTGTTCGCAAAGCACAGACTAGTGCTTAAA
AAAAAGTAAGGAAAAATTGAAAAAAATAATAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGGTTCTCAGTCCTGCCCCTTGGTGCCCTCTCGTCTGCTCCCTCACTCTGCACACCCA
CCCACACACGCCAGTCCTTCCCCATCTGGTCTCTGGAGGTAGGGTTAGGACTGTTTAACC
TCTCTTCCCACACCTCTGCAGATGCTGGGGGTCTGGGACATGAGCAGCCGTCTCCCCTGT
ACAATTCTGTTTTCTCTGACCGAGTCATTTGGTCGTATTTCCTCCCCATCCAGTTCCCTG
TCAGAGTCAATCAGGCCCTTCTTCTTTCGAGCTCCTTTGCCTGTGGAACACTGTCTGGTC
CTACTGTGGTTCCCATCACTCCCCACCCCCCACCCCCCCAGGTTAACCTTGTGCCTGTCT
CATGAATGATCACATCACCAAAAAGGGGGGCAAGAAGGACTTTTTTTTTTTTTTTTCCAT
GTAATCGTATAATAAAAATAGTAGACAAACTGCTTAATGGTCGGGGTTTTTTCACAATTT
TCAACATTAGTGTTTTTTTTTTTTTTTTGATTCTGTTTGCAAGTTAAAGGTTTGTCATTG
TTTCTTTAAAAAACAATAATGCACCATATCCCTATGCATAAAGTGCTTCTTCTATTTATA
AGGTTGAAAATTCTGAATAACCCTTTTAGCATTGTAAAAAAAAAAACCAAAAAAAACAAA
AAAACAAAAATGGAAAAAAAAAACCCTTGTATTTTGTAAATATTTTCTTTTCCTGCTTTG
AGCTGTGTATTGGCAGCGGAACATGTAGCTGTCTTTGTTCTATAGAAATGCTTTTCTTCA
GAGAAGCTGATCTTTGTTAATGTCTTGATTCTGTTCGCAAAGCACAGACTAGTGCTTAAA
AAAAAGTAAGGAAAAATTGAAAAAAATAATAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               720-876, - strand, RNAz p=0.927221

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               720-876, - strand, RNAz p=0.927221

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               29-876, gnl|bosTau2|chr19 (41938294-41939155)
               

               
               29-876, gnl|Hg17|chr17 (41464002-41463140)
               

               
               29-876, gnl|Mm7|chr11 (104443359-104442554)
               


               
               355-584, gnl|bosTau2|chr16 (24690164-24690384)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               29-876, gnl|bosTau2|chr19 (41938294-41939155)
               

               
               29-876, gnl|Hg17|chr17 (41464002-41463140)
               

               
               29-876, gnl|Mm7|chr11 (104443359-104442554)
               


               
               355-584, gnl|bosTau2|chr16 (24690164-24690384)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

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               eye (0.341006)
               

               
               cst (0.280073)
               

               
               fce (0.271592)
               

               
               ute (0.265569)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               ton (0.1755)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               pgl (0.118483)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.341006)
               

               
               cst (0.280073)
               

               
               fce (0.271592)
               

               
               ute (0.265569)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               ton (0.1755)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               pgl (0.118483)

	29-876, gnl\|bosTau2\|chr19 (41938294-41939155)
	29-876, gnl\|Hg17\|chr17 (41464002-41463140)
	29-876, gnl\|Mm7\|chr11 (104443359-104442554)

	355-584, gnl\|bosTau2\|chr16 (24690164-24690384)

	eye (0.341006)
	cst (0.280073)
	fce (0.271592)
	ute (0.265569)
	hea (0.204499)
	fcc (0.197785)
	ldo (0.194005)
	ton (0.1755)
	nje (0.16592)
	cki (0.165235)
	spl (0.143184)
	hlv (0.139256)
	nmm (0.132802)
	cov (0.132153)
	pgl (0.118483)