Ss1.1-rute2112b_o18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGCTCCGAAAGGTTGGAGAAGAGCAAGGCCAGGAGAATCCCCCTGATCATGATCCAATT CATGACCAAAGTTGGTACTTGGACCAGACCCTGCGTAAACGGCTCTACGAGGAATATGGT GTGCAAGGCTGGGCCATTGTTCAGTTCCTGGGAGATGCTGTCTTCATACCTGCTGGAGCC CCACACCAGGTGCATAATCTATATAGTTGCATAAAAGTAGCAGAAGACTTTGTATCTCCA GAACACGTAAAGCACTGTTTTCGCCTGACACAGGAATTCAGGCATCTCTCTAACACTCAT ACAAACCATGAGGATAAACTGCAGGTGAAGAACATCATTTATCACGCAGTGAAAGATGCT GTTGGCACCCTCAAGGCTCACGAATCCAAACTGGCAAGGTCTTAGGCGTGGAGCGATTCC AGACTCCCCTGCGAAGCAGGTCTTTCACTCACAACACATACAGGGAACGGCAGGTTCTCT GCTGGAGCAGAGGTCCTTCACTTGGAGCCAGTGTGGTCAGTATTACAAACTCTCCAGCCA CTCTTTTCTACGCTGCCTCAACACTGAAGGTTGACACAGGAAAGTCGCACTGTTCACACA CACAGTTTCAGACTCCAAGCCGAGGGCGCCACATCCCCATCCTGTGGCCTTTTGGGACTC TGAATTGCCTGAACATCGCTGGGCTTTCCTGCACATTCTCGTGATCTGAGGTTCATGGAG CCANGAACGTGGGCACACCCTTCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGCTCCGAAAGGTTGGAGAAGAGCAAGGCCAGGAGAATCCCCCTGATCATGATCCAATT CATGACCAAAGTTGGTACTTGGACCAGACCCTGCGTAAACGGCTCTACGAGGAATATGGT GTGCAAGGCTGGGCCATTGTTCAGTTCCTGGGAGATGCTGTCTTCATACCTGCTGGAGCC CCACACCAGGTGCATAATCTATATAGTTGCATAAAAGTAGCAGAAGACTTTGTATCTCCA GAACACGTAAAGCACTGTTTTCGCCTGACACAGGAATTCAGGCATCTCTCTAACACTCAT ACAAACCATGAGGATAAACTGCAGGTGAAGAACATCATTTATCACGCAGTGAAAGATGCT GTTGGCACCCTCAAGGCTCACGAATCCAAACTGGCAAGGTCTTAGGCGTGGAGCGATTCC AGACTCCCCTGCGAAGCAGGTCTTTCACTCACAACACATACAGGGAACGGCAGGTTCTCT GCTGGAGCAGAGGTCCTTCACTTGGAGCCAGTGTGGTCAGTATTACAAACTCTCCAGCCA CTCTTTTCTACGCTGCCTCAACACTGAAGGTTGACACAGGAAAGTCGCACTGTTCACACA CACAGTTTCAGACTCCAAGCCGAGGGCGCCACATCCCCATCCTGTGGCCTTTTGGGACTC TGAATTGCCTGAACATCGCTGGGCTTTCCTGCACATTCTCGTGATCTGAGGTTCATGGAG CCANGAACGTGGGCACACCCTTCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 556-744, - strand, RNAz p=0.899122 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 556-744, - strand, RNAz p=0.899122 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 11-190, gnl|bosTau2|chr11 (35218854-35219033) | |
| 11-190, gnl|canFam2|chr17 (41757992-41757776) | |
| 11-190, gnl|danRer3|chrNA (164414203-164414399) | |
| 11-190, gnl|dasNov1|scaffold_9396 (21289-21094) | |
| 11-190, gnl|echTel1|scaffold_188499 (17028-17227) | |
| 11-190, gnl|fr1|chrUn (114140515-114140299) | |
| 11-190, gnl|galGal2|chr4 (85696043-85696228) | |
| 11-190, gnl|hg17|chr2 (86629626-86629842) | |
| 11-190, gnl|Hg17|chr2 (86629660-86629839) | |
| 11-190, gnl|loxAfr1|scaffold_10551 (12716-12500) | |
| 11-190, gnl|mm7|chr6 (71608802-71608587) | |
| 11-190, gnl|Mm7|chr6 (71608767-71608588) | |
| 11-190, gnl|monDom2|scaffold_63 (790408-790603) | |
| 11-190, gnl|oryCun1|scaffold_172931 (43607-43823) | |
| 11-190, gnl|panTro1|chr12 (89511750-89511966) | |
| 11-190, gnl|rheMac2|chr13 (87068305-87068519) | |
| 11-190, gnl|rn3|chr4 (105112948-105112733) | |
| 11-190, gnl|tetNig1|chr1 (968659-968840) | |
| 11-190, gnl|xenTro1|scaffold_149 (661604-661819) | |
| 319-744, gnl|bosTau2|chr7 (34914632-34915059) | |
| 319-744, gnl|Hg17|chr5 (137799202-137799615) | |
| 319-744, gnl|Mm7|chr18 (35213687-35214099) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 11-190, gnl|bosTau2|chr11 (35218854-35219033) | |
| 11-190, gnl|canFam2|chr17 (41757992-41757776) | |
| 11-190, gnl|danRer3|chrNA (164414203-164414399) | |
| 11-190, gnl|dasNov1|scaffold_9396 (21289-21094) | |
| 11-190, gnl|echTel1|scaffold_188499 (17028-17227) | |
| 11-190, gnl|fr1|chrUn (114140515-114140299) | |
| 11-190, gnl|galGal2|chr4 (85696043-85696228) | |
| 11-190, gnl|hg17|chr2 (86629626-86629842) | |
| 11-190, gnl|Hg17|chr2 (86629660-86629839) | |
| 11-190, gnl|loxAfr1|scaffold_10551 (12716-12500) | |
| 11-190, gnl|mm7|chr6 (71608802-71608587) | |
| 11-190, gnl|Mm7|chr6 (71608767-71608588) | |
| 11-190, gnl|monDom2|scaffold_63 (790408-790603) | |
| 11-190, gnl|oryCun1|scaffold_172931 (43607-43823) | |
| 11-190, gnl|panTro1|chr12 (89511750-89511966) | |
| 11-190, gnl|rheMac2|chr13 (87068305-87068519) | |
| 11-190, gnl|rn3|chr4 (105112948-105112733) | |
| 11-190, gnl|tetNig1|chr1 (968659-968840) | |
| 11-190, gnl|xenTro1|scaffold_149 (661604-661819) | |
| 319-744, gnl|bosTau2|chr7 (34914632-34915059) | |
| 319-744, gnl|Hg17|chr5 (137799202-137799615) | |
| 319-744, gnl|Mm7|chr18 (35213687-35214099) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.143184) | |
| ute (0.132784) |