Non-Coding RNA Search

Ss1.1-rute2113b_n17.5

Sequence:


               
               ACACATCCCTGCCCTGGCAGCTCCCCGAAGGCTGCTGAGATACCCCAGAAAGAACTTGCA
TGGCCTCATGCCAACAGCGTGTTGCTCAACCCTCGTCCTTCTCCTAAGTCGGCTTGACAA
CTGCATTCTTCTCTTCCTTGTAAGAGGCAGAAGGAGATGGATTAAAGAGGATGTTTGAAC
TGAGACTATTAATTTCCTTGCAGTGTGTATTCAAGTCAGATCCCTTTAGAAGAGCCTTTT
GTGGTTTCATAAAATTACAACTTTGGCTATTCGGCTGCCTTTTCCAAAGTACAAATTTGG
CTTCTAAAGAAAACACACTTCATAGGAAAAAAGGAAAGAAATGAGTACGTAGTTATCTTT
AAATATATTCATTTTATATAATCGTTCTGTTACGCAAAGAAACAATTACAGTATTAACTA
CTTATTAATAAAAGAAATCATAAAACATAGTGTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACATCCCTGCCCTGGCAGCTCCCCGAAGGCTGCTGAGATACCCCAGAAAGAACTTGCA
TGGCCTCATGCCAACAGCGTGTTGCTCAACCCTCGTCCTTCTCCTAAGTCGGCTTGACAA
CTGCATTCTTCTCTTCCTTGTAAGAGGCAGAAGGAGATGGATTAAAGAGGATGTTTGAAC
TGAGACTATTAATTTCCTTGCAGTGTGTATTCAAGTCAGATCCCTTTAGAAGAGCCTTTT
GTGGTTTCATAAAATTACAACTTTGGCTATTCGGCTGCCTTTTCCAAAGTACAAATTTGG
CTTCTAAAGAAAACACACTTCATAGGAAAAAAGGAAAGAAATGAGTACGTAGTTATCTTT
AAATATATTCATTTTATATAATCGTTCTGTTACGCAAAGAAACAATTACAGTATTAACTA
CTTATTAATAAAAGAAATCATAAAACATAGTGTCTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-199, - strand, RNAz p=0.542222

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, - strand, RNAz p=0.542222

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-451, gnl|bosTau2|chr11 (65091649-65091197)
               

               
               1-451, gnl|Hg17|chr2 (13009780-13010228)
               

               
               1-451, gnl|Mm7|chr12 (15672356-15671895)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-451, gnl|bosTau2|chr11 (65091649-65091197)
               

               
               1-451, gnl|Hg17|chr2 (13009780-13010228)
               

               
               1-451, gnl|Mm7|chr12 (15672356-15671895)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ute (0.132784)
               

               
               cly (0.120642)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.132784)
               

               
               cly (0.120642)

	1-451, gnl\|bosTau2\|chr11 (65091649-65091197)
	1-451, gnl\|Hg17\|chr2 (13009780-13010228)
	1-451, gnl\|Mm7\|chr12 (15672356-15671895)