Non-Coding RNA Search

Ss1.1-rute2114b_j5.5.5

Sequence:


               
               TCTGAGCGGTACCCTGCTCCGGCCCCTTCCCCCACTGCCCATCCTCCTGGCCCCCAGTCC
CTATTCTTAGGAAGTCAAGTCTTTGTTTCTAAATGTCTAGACAGAGAACTACCCCCTTGA
TTTCTGTTCTGTTCTCCCCAGCAGGTGGCAAGAGCCGGTAGGCAGGGGAGCTGGGGCAGG
GTGTGGGCTGGAGACCCAGTGGATAGGGCCAGCTGGCCTGCCCTGATCCTCTGCTTTCTC
CTCTTGACCTCCACCCCCACCCCCTGGAACCCTGCTCCCCACCCTGTCCACCCAGGTCTG
CATTTGGGGGAGAGGAGCAGGGCATGGAAGTTGTCTCAGCCCTTAGCATCTCCAGCGAGG
TCTCCTCGGTCTTGGCCTCTCTCTTAAGCCCCATGGCCACACAGCCAGGAGACTTTCAAC
CAGGCTGCCTGGGCCATCCGAGGAGCCCTGAACCAGTCCCACCTCTGCTGCTGTTTCAGA
GAACCCAGGGACCAGCCCCGGGCTGGGTTCCGCTCCCAAAGGTGCGGCCAGACCCCCGAG
GGCTCTCTTCCTGGAAGCCCGCAGCCCCGCACTGTCCCTGCCCACCCGCCACGTTCCGGC
AGCCCCTCTGCTGTTCCCCAGGGACCTCTCATACACTGGCCCAGGAGGCTGCGGACTGGT
CCCCGCCTCCCCCTCCAAGAGGTCCCCTCTCTCTGCCAAGCCATGGGTGGGCGGGTGGGT
GGGCAGGAGGCGTGGCTCCCTCCCTGCTGGTTTTTAGATGGTCCCTATGTTGGAAGTAAA
AAGTGAAGCACTTTATTTTGGTTGTGTTTGATCGAGTTCTGCTTGGAAGTGGGGACCCCT
CACTGTGTCCCGTGTCTGCGACCTGTGTGGAGTGTCACCGCGTGTACATACTGTAAATTA
TTTATTAATGGCTAAATGCAAGTAAAGTTTGGGGTTTTTCTGTTTGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGAGCGGTACCCTGCTCCGGCCCCTTCCCCCACTGCCCATCCTCCTGGCCCCCAGTCC
CTATTCTTAGGAAGTCAAGTCTTTGTTTCTAAATGTCTAGACAGAGAACTACCCCCTTGA
TTTCTGTTCTGTTCTCCCCAGCAGGTGGCAAGAGCCGGTAGGCAGGGGAGCTGGGGCAGG
GTGTGGGCTGGAGACCCAGTGGATAGGGCCAGCTGGCCTGCCCTGATCCTCTGCTTTCTC
CTCTTGACCTCCACCCCCACCCCCTGGAACCCTGCTCCCCACCCTGTCCACCCAGGTCTG
CATTTGGGGGAGAGGAGCAGGGCATGGAAGTTGTCTCAGCCCTTAGCATCTCCAGCGAGG
TCTCCTCGGTCTTGGCCTCTCTCTTAAGCCCCATGGCCACACAGCCAGGAGACTTTCAAC
CAGGCTGCCTGGGCCATCCGAGGAGCCCTGAACCAGTCCCACCTCTGCTGCTGTTTCAGA
GAACCCAGGGACCAGCCCCGGGCTGGGTTCCGCTCCCAAAGGTGCGGCCAGACCCCCGAG
GGCTCTCTTCCTGGAAGCCCGCAGCCCCGCACTGTCCCTGCCCACCCGCCACGTTCCGGC
AGCCCCTCTGCTGTTCCCCAGGGACCTCTCATACACTGGCCCAGGAGGCTGCGGACTGGT
CCCCGCCTCCCCCTCCAAGAGGTCCCCTCTCTCTGCCAAGCCATGGGTGGGCGGGTGGGT
GGGCAGGAGGCGTGGCTCCCTCCCTGCTGGTTTTTAGATGGTCCCTATGTTGGAAGTAAA
AAGTGAAGCACTTTATTTTGGTTGTGTTTGATCGAGTTCTGCTTGGAAGTGGGGACCCCT
CACTGTGTCCCGTGTCTGCGACCTGTGTGGAGTGTCACCGCGTGTACATACTGTAAATTA
TTTATTAATGGCTAAATGCAAGTAAAGTTTGGGGTTTTTCTGTTTGGT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               131-345, - strand, RNAz p=0.986839
               

               
               478-707, - strand, RNAz p=0.786296

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               131-345, - strand, RNAz p=0.986839
               

               
               478-707, - strand, RNAz p=0.786296

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               590-836, - strand, RNAmicro p=0.969658
               

               
               221-320, - strand, RNAmicro p=0.962608

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               590-836, - strand, RNAmicro p=0.969658
               

               
               221-320, - strand, RNAmicro p=0.962608

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               131-948, gnl|bosTau2|chr21 (8146386-8145581)
               

               
               131-948, gnl|Hg17|chr15 (91388446-91387652)
               

               
               131-948, gnl|Mm7|chr7 (69271796-69272641)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               131-948, gnl|bosTau2|chr21 (8146386-8145581)
               

               
               131-948, gnl|Hg17|chr15 (91388446-91387652)
               

               
               131-948, gnl|Mm7|chr7 (69271796-69272641)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               ebs (0.354904)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               ute (0.132784)
               

               
               ecc (0.115035)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.354904)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               ute (0.132784)
               

               
               ecc (0.115035)

	131-345, - strand, RNAz p=0.986839
	478-707, - strand, RNAz p=0.786296

	590-836, - strand, RNAmicro p=0.969658
	221-320, - strand, RNAmicro p=0.962608

	131-948, gnl\|bosTau2\|chr21 (8146386-8145581)
	131-948, gnl\|Hg17\|chr15 (91388446-91387652)
	131-948, gnl\|Mm7\|chr7 (69271796-69272641)

	ebs (0.354904)
	fce (0.271592)
	ece (0.229305)
	fcc (0.197785)
	nlu (0.191681)
	fbs (0.175346)
	ute (0.132784)
	ecc (0.115035)