Ss1.1-rute2114b_p23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAGGAGCTGGAACGCGCGGGGTTGAGGCAGCGGGAGTTGGAACAGCAGCTGCAGGCCCG GGCCGCTGAGCAGCTGGAGGCGCAGGCGCAGAACGCCCAGCTGTGGCTGACCAACGAGGC GCTGCGGTCGCAGCTGCAGGGGGCACAGGAGCAGCTCCGCAGGCTGGAGGGCGACAGGCA GGGTCGCCAGGAGCAAACCCAACGAGACATGGTTGCTGTCTCCAGGAACATGCAGAAAGA GAAGCTCAGCCTCCTGCGGCAACTGGAACTCCTCAGGCAGCTGAACACAAGGCTACGAGA CGAGAGGGACGTCTGTGAGGCCAAGCGGCTGGGCAGTAGCCACAGGAAGGCTCTGACCAC GGCCCCTCTGCCGGGCCCTCCCTGCTGCTGCTGCTGCTGCTGTTGCAGTAGCTGGGCTCG CCCCCCCAGACGGGGCTCTGGCCACCTTCCCAGTGCCCGATGACCAGGCCAAGTGACTCA CTGGGTGTTACTTGGTTACTCAGAGAAACAGCCCCTTGAAGGTGACTCGTCATGGCCAGG GGCTGCCCATCCGGGAAACGGGTTGCCAGTGGACTGTCTGGCCCACCTGACTGGCAGGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAGGAGCTGGAACGCGCGGGGTTGAGGCAGCGGGAGTTGGAACAGCAGCTGCAGGCCCG GGCCGCTGAGCAGCTGGAGGCGCAGGCGCAGAACGCCCAGCTGTGGCTGACCAACGAGGC GCTGCGGTCGCAGCTGCAGGGGGCACAGGAGCAGCTCCGCAGGCTGGAGGGCGACAGGCA GGGTCGCCAGGAGCAAACCCAACGAGACATGGTTGCTGTCTCCAGGAACATGCAGAAAGA GAAGCTCAGCCTCCTGCGGCAACTGGAACTCCTCAGGCAGCTGAACACAAGGCTACGAGA CGAGAGGGACGTCTGTGAGGCCAAGCGGCTGGGCAGTAGCCACAGGAAGGCTCTGACCAC GGCCCCTCTGCCGGGCCCTCCCTGCTGCTGCTGCTGCTGCTGTTGCAGTAGCTGGGCTCG CCCCCCCAGACGGGGCTCTGGCCACCTTCCCAGTGCCCGATGACCAGGCCAAGTGACTCA CTGGGTGTTACTTGGTTACTCAGAGAAACAGCCCCTTGAAGGTGACTCGTCATGGCCAGG GGCTGCCCATCCGGGAAACGGGTTGCCAGTGGACTGTCTGGCCCACCTGACTGGCAGGCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 300-419, - strand, RNAz p=0.634302 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 300-419, - strand, RNAz p=0.634302 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 36-204, gnl|bosTau2|chr29 (44825430-44825598) | |
| 36-204, gnl|canFam2|chr12 (8793225-8793371) | |
| 36-204, gnl|canFam2|chr18 (48232708-48233172) | |
| 36-204, gnl|dasNov1|scaffold_68285 (1695-1840) | |
| 36-204, gnl|echTel1|scaffold_293438 (7002-6856) | |
| 36-204, gnl|echTel1|scaffold_303637 (10869-10455) | |
| 36-204, gnl|hg17|chr11 (820761-821177) | |
| 36-204, gnl|Hg17|chr11 (820864-821032) | |
| 36-204, gnl|hg17|chr6 (36796124-36796270) | |
| 36-204, gnl|loxAfr1|scaffold_1063 (26566-26420) | |
| 36-204, gnl|loxAfr1|scaffold_69254 (4759-4319) | |
| 36-204, gnl|mm7|chr17 (27331840-27331986) | |
| 36-204, gnl|mm7|chr7 (137882681-137882986) | |
| 36-204, gnl|Mm7|chr7 (137882781-137882949) | |
| 36-204, gnl|monDom2|scaffold_363 (24550-25008) | |
| 36-204, gnl|monDom2|scaffold_42 (9805888-9805741) | |
| 36-204, gnl|oryCun1|scaffold_186592 (5435-5318) | |
| 36-204, gnl|oryCun1|scaffold_75472 (960-621) | |
| 36-204, gnl|panTro1|chr5 (37271785-37271931) | |
| 36-204, gnl|rheMac2|chr14 (641988-642420) | |
| 36-204, gnl|rheMac2|chr4 (36480830-36480976) | |
| 36-204, gnl|rn3|chr1 (201805503-201805812) | |
| 36-204, gnl|rn3|chr20 (7432037-7432183) | |
| 36-204, gnl|tetNig1|chr19 (2356673-2356526) | |
| 36-204, gnl|xenTro1|scaffold_3402 (12893-13335) | |
| 262-600, gnl|bosTau2|chr29 (44825990-44826322) | |
| 262-600, gnl|Hg17|chr11 (821519-821837) | |
| 262-600, gnl|Mm7|chr7 (137883295-137883598) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 36-204, gnl|bosTau2|chr29 (44825430-44825598) | |
| 36-204, gnl|canFam2|chr12 (8793225-8793371) | |
| 36-204, gnl|canFam2|chr18 (48232708-48233172) | |
| 36-204, gnl|dasNov1|scaffold_68285 (1695-1840) | |
| 36-204, gnl|echTel1|scaffold_293438 (7002-6856) | |
| 36-204, gnl|echTel1|scaffold_303637 (10869-10455) | |
| 36-204, gnl|hg17|chr11 (820761-821177) | |
| 36-204, gnl|Hg17|chr11 (820864-821032) | |
| 36-204, gnl|hg17|chr6 (36796124-36796270) | |
| 36-204, gnl|loxAfr1|scaffold_1063 (26566-26420) | |
| 36-204, gnl|loxAfr1|scaffold_69254 (4759-4319) | |
| 36-204, gnl|mm7|chr17 (27331840-27331986) | |
| 36-204, gnl|mm7|chr7 (137882681-137882986) | |
| 36-204, gnl|Mm7|chr7 (137882781-137882949) | |
| 36-204, gnl|monDom2|scaffold_363 (24550-25008) | |
| 36-204, gnl|monDom2|scaffold_42 (9805888-9805741) | |
| 36-204, gnl|oryCun1|scaffold_186592 (5435-5318) | |
| 36-204, gnl|oryCun1|scaffold_75472 (960-621) | |
| 36-204, gnl|panTro1|chr5 (37271785-37271931) | |
| 36-204, gnl|rheMac2|chr14 (641988-642420) | |
| 36-204, gnl|rheMac2|chr4 (36480830-36480976) | |
| 36-204, gnl|rn3|chr1 (201805503-201805812) | |
| 36-204, gnl|rn3|chr20 (7432037-7432183) | |
| 36-204, gnl|tetNig1|chr19 (2356673-2356526) | |
| 36-204, gnl|xenTro1|scaffold_3402 (12893-13335) | |
| 262-600, gnl|bosTau2|chr29 (44825990-44826322) | |
| 262-600, gnl|Hg17|chr11 (821519-821837) | |
| 262-600, gnl|Mm7|chr7 (137883295-137883598) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.175593) | |
| hyp (0.142837) | |
| ute (0.132784) |