Non-Coding RNA Search

Ss1.1-rute2115b_d16.5

Sequence:


               
               GGCACTCTTCTCGCCCTGGTATACCCTTCCTCATTGTTTGAGTAGAGTGGTATTTACCCT
AAGCAAACAAACAAACAAACAAAAAACCATATCACCGTGAGCTTAAGGATCAGATGAGGA
ATAGCAAGTGACGTGATAAAGCAAGTCATCTTCACAGGGTAGAAGAGAGATTGGAGAGTT
GGTAGATGACTATCTGAAAAGACAATTGTTCTCTGAAAACTCTTCTGTGATATAGCCATG
TGGGAAGAGATATTTGGCTCTGATTATTTTCTTAGTTAATGGGTAACTGAATTTATTCCC
CTACCCCTCAAAAAATAAAATCTTTGGAAAAGAGAATGAGGATGGTTAGTTTTGGACCAG
TTATGGCTCTAAACAAAAGGAGTTGGCATTTGGAGATGGCATGCCAGAACCTGTATAGAT
GTCCTTGTGTCACATCACTTCTCAAGTATTCCTTAGTTGGGTTTTATCCTTTTAGCTGAG
CTCTGGGTGGGGGGACAGACATTGAGGGAGGGTGGGGGTGTATGTGGAAACCCATGCTTC
CTTGGGCTGGCAAATGTCTACATCTGGAAACAGGTGTACCTAATGAGCTTCTCCATTCAC
TTGGTAAAAATAGATTTGTGTGTGTACCATCTGGGCTCCCTCCCACCCCCCAAACCACTC
CCCCTCCCCATTATTAAAAAAAAATTCAGGACAGCACTCCAGGCCACTTGGGTCTCAGTG
TAAGATCCCTGTAACTATCTGGAAGGAAAATAGAGCCAAGACCTCGGGTCTTAAATATAT
AGGAATGGCCTTTCTTTAGTCTTCAGGACTATGGTGTGAAAACAAGTAGGGGTCTAATCT
CCTAGAAGGTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCACTCTTCTCGCCCTGGTATACCCTTCCTCATTGTTTGAGTAGAGTGGTATTTACCCT
AAGCAAACAAACAAACAAACAAAAAACCATATCACCGTGAGCTTAAGGATCAGATGAGGA
ATAGCAAGTGACGTGATAAAGCAAGTCATCTTCACAGGGTAGAAGAGAGATTGGAGAGTT
GGTAGATGACTATCTGAAAAGACAATTGTTCTCTGAAAACTCTTCTGTGATATAGCCATG
TGGGAAGAGATATTTGGCTCTGATTATTTTCTTAGTTAATGGGTAACTGAATTTATTCCC
CTACCCCTCAAAAAATAAAATCTTTGGAAAAGAGAATGAGGATGGTTAGTTTTGGACCAG
TTATGGCTCTAAACAAAAGGAGTTGGCATTTGGAGATGGCATGCCAGAACCTGTATAGAT
GTCCTTGTGTCACATCACTTCTCAAGTATTCCTTAGTTGGGTTTTATCCTTTTAGCTGAG
CTCTGGGTGGGGGGACAGACATTGAGGGAGGGTGGGGGTGTATGTGGAAACCCATGCTTC
CTTGGGCTGGCAAATGTCTACATCTGGAAACAGGTGTACCTAATGAGCTTCTCCATTCAC
TTGGTAAAAATAGATTTGTGTGTGTACCATCTGGGCTCCCTCCCACCCCCCAAACCACTC
CCCCTCCCCATTATTAAAAAAAAATTCAGGACAGCACTCCAGGCCACTTGGGTCTCAGTG
TAAGATCCCTGTAACTATCTGGAAGGAAAATAGAGCCAAGACCTCGGGTCTTAAATATAT
AGGAATGGCCTTTCTTTAGTCTTCAGGACTATGGTGTGAAAACAAGTAGGGGTCTAATCT
CCTAGAAGGTAG

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               148-254, - strand, RNAz p=0.547077
               

               
               719-852, - strand, RNAz p=0.839767
               

               
               734-852, - strand, RNAz p=0.960453

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               148-254, - strand, RNAz p=0.547077
               

               
               719-852, - strand, RNAz p=0.839767
               

               
               734-852, - strand, RNAz p=0.960453

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-852, gnl|bosTau2|chr19 (34472753-34471922)
               

               
               1-852, gnl|canFam2|chr9 (25759830-25758887)
               

               
               1-852, gnl|dasNov1|scaffold_5157 (44461-45404)
               

               
               1-852, gnl|echTel1|scaffold_310535 (29245-30188)
               

               
               1-852, gnl|hg17|chr17 (35544182-35545141)
               

               
               1-852, gnl|Hg17|chr17 (35544529-35545343)
               

               
               1-852, gnl|loxAfr1|scaffold_39971 (1331-376)
               

               
               1-852, gnl|mm7|chr11 (98914504-98915424)
               

               
               1-852, gnl|Mm7|chr11 (98914858-98915674)
               

               
               1-852, gnl|monDom2|scaffold_18 (49355952-49356930)
               

               
               1-852, gnl|oryCun1|scaffold_178578 (7798-8746)
               

               
               1-852, gnl|panTro1|chr19 (38783658-38784617)
               

               
               1-852, gnl|rheMac2|chr16 (50243361-50244317)
               

               
               1-852, gnl|rn3|chr10 (87592041-87592896)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-852, gnl|bosTau2|chr19 (34472753-34471922)
               

               
               1-852, gnl|canFam2|chr9 (25759830-25758887)
               

               
               1-852, gnl|dasNov1|scaffold_5157 (44461-45404)
               

               
               1-852, gnl|echTel1|scaffold_310535 (29245-30188)
               

               
               1-852, gnl|hg17|chr17 (35544182-35545141)
               

               
               1-852, gnl|Hg17|chr17 (35544529-35545343)
               

               
               1-852, gnl|loxAfr1|scaffold_39971 (1331-376)
               

               
               1-852, gnl|mm7|chr11 (98914504-98915424)
               

               
               1-852, gnl|Mm7|chr11 (98914858-98915674)
               

               
               1-852, gnl|monDom2|scaffold_18 (49355952-49356930)
               

               
               1-852, gnl|oryCun1|scaffold_178578 (7798-8746)
               

               
               1-852, gnl|panTro1|chr19 (38783658-38784617)
               

               
               1-852, gnl|rheMac2|chr16 (50243361-50244317)
               

               
               1-852, gnl|rn3|chr10 (87592041-87592896)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               fhi (0.169578)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               ese (0.126502)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               ese (0.126502)

	148-254, - strand, RNAz p=0.547077
	719-852, - strand, RNAz p=0.839767
	734-852, - strand, RNAz p=0.960453

	1-852, gnl\|bosTau2\|chr19 (34472753-34471922)
	1-852, gnl\|canFam2\|chr9 (25759830-25758887)
	1-852, gnl\|dasNov1\|scaffold_5157 (44461-45404)
	1-852, gnl\|echTel1\|scaffold_310535 (29245-30188)
	1-852, gnl\|hg17\|chr17 (35544182-35545141)
	1-852, gnl\|Hg17\|chr17 (35544529-35545343)
	1-852, gnl\|loxAfr1\|scaffold_39971 (1331-376)
	1-852, gnl\|mm7\|chr11 (98914504-98915424)
	1-852, gnl\|Mm7\|chr11 (98914858-98915674)
	1-852, gnl\|monDom2\|scaffold_18 (49355952-49356930)
	1-852, gnl\|oryCun1\|scaffold_178578 (7798-8746)
	1-852, gnl\|panTro1\|chr19 (38783658-38784617)
	1-852, gnl\|rheMac2\|chr16 (50243361-50244317)
	1-852, gnl\|rn3\|chr10 (87592041-87592896)