Non-Coding RNA Search

Ss1.1-rute2116b_h5.5

Sequence:


               
               GTCGACTACTATGGGCCCTGCCAGGCCGTCGGGGTCCTCTCTGAATACAGTTCTGTTGCT
GAGTGTGCTGCTGTGAAGTGTCCTTCGCTCTCAGCGACCGAATGCAAACCCATCATCCCA
CCCGGTGCTTGTTGCCCATTATGTGCTGGGATGTTAAGAGTTTTATTTGACAAAGAAAAA
CTGGATACTATTGCCAAGGTAACAAACAAGAAACCAATAACAGTTCTGGAAATACTTCAG
AGAATCCGCATGCATGTGTCTGTCCCACAGTGTGACGTGTTTGGCTACTTCAGCATTGAA
TCGGAGATTGTCATCCTCATCACTCCTGTGGATCACTCTCCAAAAGCTTTGCAGATCGAG
GCCTGCAACAAGGAGGCAGAGAAGATCGAATCCCTTATCAACTCTGACAGCCCTACGCTG
GCGGCCCACGTCCCTCTCTCTGCCCTCATCATTTCCCAGGTGCAGGTCTCCAGCAGTATT
CCCTCGGCCGCCCCCAGGGCCCTGCCGCCCTGCCGCTCCCACCTCTTCCTCCTCAGCTTG
GGCCTCACCTTGCACAGGGTCTGGACACACAACTGACTGGCCAGAAAATGTGCGAAATGT
TCCTCCATCTAATTTTTCTACGTGGGAAAAGACATACAGGACTGCCGGTCTGTAGTTGAA
TAGTGGCCAAGTCAAAGCACTTTTCACCTCTATTCACCACACAGTATTTTTCTTTATTGC
CAATGTTAGTAGGGGTCTTGTTTTGTTTCTACAGATGTCACAATATCTTCTTCAGATGAC
TGATGAAAAGAGGATGTCTCCTTCTGGTGGATCACTGCCTTACAATTTACAATTTACATT
TGCTCATTGATGGATCCCCCACTCTGAAACAAATTCTATGCCACTGATAAATGAGATGAT
CACTTTTTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCGACTACTATGGGCCCTGCCAGGCCGTCGGGGTCCTCTCTGAATACAGTTCTGTTGCT
GAGTGTGCTGCTGTGAAGTGTCCTTCGCTCTCAGCGACCGAATGCAAACCCATCATCCCA
CCCGGTGCTTGTTGCCCATTATGTGCTGGGATGTTAAGAGTTTTATTTGACAAAGAAAAA
CTGGATACTATTGCCAAGGTAACAAACAAGAAACCAATAACAGTTCTGGAAATACTTCAG
AGAATCCGCATGCATGTGTCTGTCCCACAGTGTGACGTGTTTGGCTACTTCAGCATTGAA
TCGGAGATTGTCATCCTCATCACTCCTGTGGATCACTCTCCAAAAGCTTTGCAGATCGAG
GCCTGCAACAAGGAGGCAGAGAAGATCGAATCCCTTATCAACTCTGACAGCCCTACGCTG
GCGGCCCACGTCCCTCTCTCTGCCCTCATCATTTCCCAGGTGCAGGTCTCCAGCAGTATT
CCCTCGGCCGCCCCCAGGGCCCTGCCGCCCTGCCGCTCCCACCTCTTCCTCCTCAGCTTG
GGCCTCACCTTGCACAGGGTCTGGACACACAACTGACTGGCCAGAAAATGTGCGAAATGT
TCCTCCATCTAATTTTTCTACGTGGGAAAAGACATACAGGACTGCCGGTCTGTAGTTGAA
TAGTGGCCAAGTCAAAGCACTTTTCACCTCTATTCACCACACAGTATTTTTCTTTATTGC
CAATGTTAGTAGGGGTCTTGTTTTGTTTCTACAGATGTCACAATATCTTCTTCAGATGAC
TGATGAAAAGAGGATGTCTCCTTCTGGTGGATCACTGCCTTACAATTTACAATTTACATT
TGCTCATTGATGGATCCCCCACTCTGAAACAAATTCTATGCCACTGATAAATGAGATGAT
CACTTTTTAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               153-367, gnl|bosTau2|chr8 (31880071-31879858)
               

               
               153-367, gnl|Hg17|chr9 (36111483-36111697)
               

               
               153-367, gnl|Mm7|chr4 (43956052-43956254)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               153-367, gnl|bosTau2|chr8 (31880071-31879858)
               

               
               153-367, gnl|Hg17|chr9 (36111483-36111697)
               

               
               153-367, gnl|Mm7|chr4 (43956052-43956254)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ute (0.132784)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.132784)

	153-367, gnl\|bosTau2\|chr8 (31880071-31879858)
	153-367, gnl\|Hg17\|chr9 (36111483-36111697)
	153-367, gnl\|Mm7\|chr4 (43956052-43956254)