Non-Coding RNA Search

Ss1.1-rute2116b_j15.5

Sequence:


               
               TTTCCTGAGTACCTGGACCCAGGAAAGAAGCATGAAGTGGCTTGTGATCCTTGGGCTGGT
GGCCCTCTCAGACTGCTTAGTCATGATCCCTCTCACGAAGGTCAAGTCCGTCCGAGAAAG
CCTCAGAGAAAAAGGCTTGCTGAAAAATTTCCTCAAGGAACATCCTTACAAAATGATCCA
GAACCAGAAAATCGCTTGTCACCCGCTGAGGAACTACCTGGATATGGCCTACGTGGGCAA
CATCACCATCGGCACACCCCCACAGCAGTTCAGCGTCGTCTTTGACACCGGCTCAGCTGA
CCTGTGGGTGCCCTCCGTCTACTGCAAAAGCAAGGCCTGTGTTACACACAGATCCTTCAA
ACCTGCCCGCTCCAGCACCTTCCGCCTCCCGGGCAAAAACTTCGAGTTGGAATACGGCTC
TGGAAAGATTTCAGGATTCCTTGGCTATGACACTGTTCGGATTGGCAGACTCAGGACCAT
GAACCAGGTATTTGGCCTGAGCCAGTTGGAGACCGGTGAGGCCTTTGAACATGGAGTCTT
TGATGGCCTCCTGGGCCTGGGCTTTCCCAGCCTCGCCCTCAAAGGGACCACCCCCATCTT
CGACAACCTAAAGAAGCAAGGGCAAATTTCTGAGCCTGTCTTTGCCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCCTGAGTACCTGGACCCAGGAAAGAAGCATGAAGTGGCTTGTGATCCTTGGGCTGGT
GGCCCTCTCAGACTGCTTAGTCATGATCCCTCTCACGAAGGTCAAGTCCGTCCGAGAAAG
CCTCAGAGAAAAAGGCTTGCTGAAAAATTTCCTCAAGGAACATCCTTACAAAATGATCCA
GAACCAGAAAATCGCTTGTCACCCGCTGAGGAACTACCTGGATATGGCCTACGTGGGCAA
CATCACCATCGGCACACCCCCACAGCAGTTCAGCGTCGTCTTTGACACCGGCTCAGCTGA
CCTGTGGGTGCCCTCCGTCTACTGCAAAAGCAAGGCCTGTGTTACACACAGATCCTTCAA
ACCTGCCCGCTCCAGCACCTTCCGCCTCCCGGGCAAAAACTTCGAGTTGGAATACGGCTC
TGGAAAGATTTCAGGATTCCTTGGCTATGACACTGTTCGGATTGGCAGACTCAGGACCAT
GAACCAGGTATTTGGCCTGAGCCAGTTGGAGACCGGTGAGGCCTTTGAACATGGAGTCTT
TGATGGCCTCCTGGGCCTGGGCTTTCCCAGCCTCGCCCTCAAAGGGACCACCCCCATCTT
CGACAACCTAAAGAAGCAAGGGCAAATTTCTGAGCCTGTCTTTGCCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55741443|ref|NP_001001536.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55741443|ref|NP_001001536.2|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               480-598, - strand, RNAz p=0.581513

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               480-598, - strand, RNAz p=0.581513

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               218-383, gnl|bosTau2|chr29 (31113700-31113535)
               

               
               218-383, gnl|Hg17|chr11 (60749381-60749524)
               

               
               218-383, gnl|Mm7|chr19 (10355292-10355135)
               


               
               480-648, gnl|bosTau2|chr29 (30738116-30738284)
               

               
               480-648, gnl|Hg17|chr11 (60732358-60732526)
               

               
               480-648, gnl|Mm7|chr19 (10353943-10353775)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               218-383, gnl|bosTau2|chr29 (31113700-31113535)
               

               
               218-383, gnl|Hg17|chr11 (60749381-60749524)
               

               
               218-383, gnl|Mm7|chr19 (10355292-10355135)
               


               
               480-648, gnl|bosTau2|chr29 (30738116-30738284)
               

               
               480-648, gnl|Hg17|chr11 (60732358-60732526)
               

               
               480-648, gnl|Mm7|chr19 (10353943-10353775)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ute (2.12455)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (2.12455)

	218-383, gnl\|bosTau2\|chr29 (31113700-31113535)
	218-383, gnl\|Hg17\|chr11 (60749381-60749524)
	218-383, gnl\|Mm7\|chr19 (10355292-10355135)

	480-648, gnl\|bosTau2\|chr29 (30738116-30738284)
	480-648, gnl\|Hg17\|chr11 (60732358-60732526)
	480-648, gnl\|Mm7\|chr19 (10353943-10353775)