Ss1.1-rute2117b_h21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCTTTCCTGAGTACCTGGACCCAGGAAAGAAGCATGAAGTGGCTTGTGATCCTTGGGCT GGTGGCCCTCTCAGACTGCTTAGTCATGATCCCTCTCACGAAGGTCAAGTCTGTCCGAGA AAGCCTCAGGGAAAAAGGCTTGCTGAAAAATTTCCTCAAGGAACATCCTTACAACATGAT CCAGTTCCGCCTGATGAAGAATTCTTCCCATGTCCGGAAATTTGCTTCCCATCCACTGAG GAACTACCTGGATTTGGCCTACATGGGCAACATCAGCATCGGCACACCCCCGCAGCAGTT CAGTGTCGTCTTTGACACCGGCTCATCAGACCTCTGGGTGCCCTCCATCTACTGCAAAAG CAAGGCCTGTGTTACACACAGGTCCTTCAACCCTTCCCACTCCAGCACCTTCCATGACTG GGGCAAATCCATCACGTTGGAATACGGCTCTGGGGAGATGTCAGGATTTCTTGGACATGA CACCGTTCGGATCGGCCAACTCACCAGCACGGACCAGGCATTTGGCCTGAGCAAGGAGGA GATCAGTAGGACCTTTGAACATGCCATCTTCGATGGCATCCTGGGCCTGGCCTATCCCAG CCTCGCCATCAAAGGGACCACCATCATCATCGACAACCTAAAGAAGCAAGACCAAATTTC TGAGCCTGTCTTTGCCTTCTACCTGAGCACCAACAAAGAGGAGGGCAGCGTGGTGATGTT TGGTGGCGTGGACAAGAAATACTACAAAGGAGACCTCAAGTGGGTGCCCCTCTCAAAACC CCACTACTGGCAGATCGCCTTGGACAGGATCACCTGGAGAGGGGAGGTCATTGGTTGTCC CCGCGGCTGCCAGGCCATCATGGATACCGGGACGTCATTGCTGATTGGCCCAAGTAAAGC GGTGGCCAAAATCCATTCTCTCATCAATGCTGCGTACGTTAAGGAAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCTTTCCTGAGTACCTGGACCCAGGAAAGAAGCATGAAGTGGCTTGTGATCCTTGGGCT GGTGGCCCTCTCAGACTGCTTAGTCATGATCCCTCTCACGAAGGTCAAGTCTGTCCGAGA AAGCCTCAGGGAAAAAGGCTTGCTGAAAAATTTCCTCAAGGAACATCCTTACAACATGAT CCAGTTCCGCCTGATGAAGAATTCTTCCCATGTCCGGAAATTTGCTTCCCATCCACTGAG GAACTACCTGGATTTGGCCTACATGGGCAACATCAGCATCGGCACACCCCCGCAGCAGTT CAGTGTCGTCTTTGACACCGGCTCATCAGACCTCTGGGTGCCCTCCATCTACTGCAAAAG CAAGGCCTGTGTTACACACAGGTCCTTCAACCCTTCCCACTCCAGCACCTTCCATGACTG GGGCAAATCCATCACGTTGGAATACGGCTCTGGGGAGATGTCAGGATTTCTTGGACATGA CACCGTTCGGATCGGCCAACTCACCAGCACGGACCAGGCATTTGGCCTGAGCAAGGAGGA GATCAGTAGGACCTTTGAACATGCCATCTTCGATGGCATCCTGGGCCTGGCCTATCCCAG CCTCGCCATCAAAGGGACCACCATCATCATCGACAACCTAAAGAAGCAAGACCAAATTTC TGAGCCTGTCTTTGCCTTCTACCTGAGCACCAACAAAGAGGAGGGCAGCGTGGTGATGTT TGGTGGCGTGGACAAGAAATACTACAAAGGAGACCTCAAGTGGGTGCCCCTCTCAAAACC CCACTACTGGCAGATCGCCTTGGACAGGATCACCTGGAGAGGGGAGGTCATTGGTTGTCC CCGCGGCTGCCAGGCCATCATGGATACCGGGACGTCATTGCTGATTGGCCCAAGTAAAGC GGTGGCCAAAATCCATTCTCTCATCAATGCTGCGTACGTTAAGGAAGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 244-416, gnl|bosTau2|chr29 (27936005-27935833) | |
| 244-416, gnl|Hg17|chr11 (60730548-60730714) | |
| 244-416, gnl|Mm7|chr19 (10355293-10355132) | |
| 260-369, gnl|bosTau2|chr29 (30823720-30823829) | |
| 260-369, gnl|canFam2|chr18 (58167098-58166972) | |
| 260-369, gnl|canFam2|chr38 (5378918-5378758) | |
| 260-369, gnl|danRer3|chr18 (16787755-16787900) | |
| 260-369, gnl|danRer3|chr3 (22530106-22529959) | |
| 260-369, gnl|dasNov1|scaffold_80246 (1165-1010) | |
| 260-369, gnl|dasNov1|scaffold_81629 (5568-5726) | |
| 260-369, gnl|echTel1|scaffold_286890 (50743-50593) | |
| 260-369, gnl|echTel1|scaffold_307221 (11866-12027) | |
| 260-369, gnl|fr1|chrUn (268954492-268954634) | |
| 260-369, gnl|fr1|chrUn (23926657-23926519) | |
| 260-369, gnl|galGal2|chr26 (954108-953952) | |
| 260-369, gnl|galGal2|chrUn (135424697-135424827) | |
| 260-369, gnl|hg17|chr1 (202862136-202862296) | |
| 260-369, gnl|hg17|chr11 (60730552-60730706) | |
| 260-369, gnl|Hg17|chr11 (60730564-60730673) | |
| 260-369, gnl|loxAfr1|scaffold_1068 (142519-142676) | |
| 260-369, gnl|loxAfr1|scaffold_18105 (21427-21277) | |
| 260-369, gnl|mm7|chr1 (131558752-131558910) | |
| 260-369, gnl|mm7|chr19 (10355294-10355139) | |
| 260-369, gnl|Mm7|chr19 (10355280-10355171) | |
| 260-369, gnl|monDom2|scaffold_42 (1170943-1171079) | |
| 260-369, gnl|oryCun1|scaffold_185676 (40209-40362) | |
| 260-369, gnl|oryCun1|scaffold_210069 (11541-11690) | |
| 260-369, gnl|panTro1|chr1 (186174076-186173916) | |
| 260-369, gnl|panTro1|chr9 (61665247-61665401) | |
| 260-369, gnl|rheMac2|chr1 (164322720-164322880) | |
| 260-369, gnl|rheMac2|chr14 (12907422-12907268) | |
| 260-369, gnl|rn3|chr1 (213329208-213329054) | |
| 260-369, gnl|rn3|chr13 (44609625-44609777) | |
| 260-369, gnl|tetNig1|chrUn_random (97879710-97879557) | |
| 260-369, gnl|tetNig1|chrUn_random (85060565-85060431) | |
| 260-369, gnl|xenTro1|scaffold_1212 (67101-67258) | |
| 260-369, gnl|xenTro1|scaffold_525 (131713-131586) | |
| 488-689, gnl|bosTau2|chr7 (31245273-31245072) | |
| 488-689, gnl|Hg17|chr11 (60769991-60770192) | |
| 488-689, gnl|Mm7|chr19 (10353965-10353764) | |
| 490-688, gnl|bosTau2|chr29 (30738096-30738294) | |
| 490-688, gnl|Hg17|chr11 (60732338-60732536) | |
| 490-688, gnl|Mm7|chr19 (10353963-10353765) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 244-416, gnl|bosTau2|chr29 (27936005-27935833) | |
| 244-416, gnl|Hg17|chr11 (60730548-60730714) | |
| 244-416, gnl|Mm7|chr19 (10355293-10355132) | |
| 260-369, gnl|bosTau2|chr29 (30823720-30823829) | |
| 260-369, gnl|canFam2|chr18 (58167098-58166972) | |
| 260-369, gnl|canFam2|chr38 (5378918-5378758) | |
| 260-369, gnl|danRer3|chr18 (16787755-16787900) | |
| 260-369, gnl|danRer3|chr3 (22530106-22529959) | |
| 260-369, gnl|dasNov1|scaffold_80246 (1165-1010) | |
| 260-369, gnl|dasNov1|scaffold_81629 (5568-5726) | |
| 260-369, gnl|echTel1|scaffold_286890 (50743-50593) | |
| 260-369, gnl|echTel1|scaffold_307221 (11866-12027) | |
| 260-369, gnl|fr1|chrUn (268954492-268954634) | |
| 260-369, gnl|fr1|chrUn (23926657-23926519) | |
| 260-369, gnl|galGal2|chr26 (954108-953952) | |
| 260-369, gnl|galGal2|chrUn (135424697-135424827) | |
| 260-369, gnl|hg17|chr1 (202862136-202862296) | |
| 260-369, gnl|hg17|chr11 (60730552-60730706) | |
| 260-369, gnl|Hg17|chr11 (60730564-60730673) | |
| 260-369, gnl|loxAfr1|scaffold_1068 (142519-142676) | |
| 260-369, gnl|loxAfr1|scaffold_18105 (21427-21277) | |
| 260-369, gnl|mm7|chr1 (131558752-131558910) | |
| 260-369, gnl|mm7|chr19 (10355294-10355139) | |
| 260-369, gnl|Mm7|chr19 (10355280-10355171) | |
| 260-369, gnl|monDom2|scaffold_42 (1170943-1171079) | |
| 260-369, gnl|oryCun1|scaffold_185676 (40209-40362) | |
| 260-369, gnl|oryCun1|scaffold_210069 (11541-11690) | |
| 260-369, gnl|panTro1|chr1 (186174076-186173916) | |
| 260-369, gnl|panTro1|chr9 (61665247-61665401) | |
| 260-369, gnl|rheMac2|chr1 (164322720-164322880) | |
| 260-369, gnl|rheMac2|chr14 (12907422-12907268) | |
| 260-369, gnl|rn3|chr1 (213329208-213329054) | |
| 260-369, gnl|rn3|chr13 (44609625-44609777) | |
| 260-369, gnl|tetNig1|chrUn_random (97879710-97879557) | |
| 260-369, gnl|tetNig1|chrUn_random (85060565-85060431) | |
| 260-369, gnl|xenTro1|scaffold_1212 (67101-67258) | |
| 260-369, gnl|xenTro1|scaffold_525 (131713-131586) | |
| 488-689, gnl|bosTau2|chr7 (31245273-31245072) | |
| 488-689, gnl|Hg17|chr11 (60769991-60770192) | |
| 488-689, gnl|Mm7|chr19 (10353965-10353764) | |
| 490-688, gnl|bosTau2|chr29 (30738096-30738294) | |
| 490-688, gnl|Hg17|chr11 (60732338-60732536) | |
| 490-688, gnl|Mm7|chr19 (10353963-10353765) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ute (0.796707) | |
| pla (0.133672) |