Non-Coding RNA Search

Ss1.1-rute2117b_n22.5

Sequence:


               
               GCCGACTTCTCATCCCAAATCCGCTCCAACCCTGAGCTGACCACCCTCTTTGAAAGCATC
CAGAAGGATTCTGCATCAGCCCCCAGCACAGACTCCATGGAGCTCAGCTAGTGCTCCCCG
GCCCAAGAACCCCCACTCACAAGGAGCCTCACGCACCCACCCCCACAGGCCTCTACTCCT
GCCCTTTACTCATCTCACTGGGGGCCCCCCTTGCTCCCAGTTGGGGGGGGGAGGAGGGGT
TTACAGTGCCTTCTCTGTTGGCCCCCAATCAGAGCTGCAAGGCTGCCAACAGTTGGCCCC
TTTGACTCAGGACAGTCGCTCAATCAACAGGGTGATAGTTCTTCTAAGCCTCTTCCATGG
AGCTGGATGACTTCACAGGGTCAGCCTGGCTCCTTCAAGCCATGGGAGTCTCTGCCTCAG
AGGTCTTCGTATTTATAAACACTCTTGTGCTCACGGCTCTGAAAGGTCAGGAAGGTGCAG
ACTGGCCTTCCTCCCCGACTGGAGTCCCATGTTGCTCATTTCACCTGATTTGCCAAAAAT
TAGTGCTTTGCCAGACATCTTAATGCAGATACTCCTGGGTTATCCACATTTTTGAATCCG
AGATGCTTTATTTCAAATTGGCAGTAATAAATCCAAAATGCATAGTACTTCTTGCAAGGG
GGGTGGGGCATGGAATTAGATCTAATTTTTTTTCCTAATTCCAGAACTCTTATGTAGCCA
ACTAGGAACAGGAAAGCACAAGGAAACAGTACGTATCACCTTTCATGTCCCCCACCTAGG
TAGCCACAAGGTTTGTCCTGGGAAAAGTATGGAGTATGTCCAGTTTGTAGTATCAAAGAT
AGAAACATTAATCAACAGGCCAAAGAATTTCCTGTGCTATTCCAGGTTAATAAAGTAGAG
ATTCTAAATTGCTTTTCTCTGCACAATTCTTCCACTCAGTAGTCAAGACCATCAGAATAC
TTCTCAAATCAACTCTCAAAGGAGGCAGTCAATCTGTAAGACATTTCTCCACTAGAACCA
AGGGACTTAAACCCAGTCTTGTGCTGTAGCACATGTCCTATCCCATGGGACCTGTGCTGC
CACTTCACGCCATTTCTTGCAAAAGTGGTCTCACAACCTTACAAAACAGCTAAGTTCTAG
CTACTGCAGCTTCAGGTCTGGGGCTACAGTTGAAAAGGGAACTCGATTGTTGAATTCTGA
ATACCAAGAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGACTTCTCATCCCAAATCCGCTCCAACCCTGAGCTGACCACCCTCTTTGAAAGCATC
CAGAAGGATTCTGCATCAGCCCCCAGCACAGACTCCATGGAGCTCAGCTAGTGCTCCCCG
GCCCAAGAACCCCCACTCACAAGGAGCCTCACGCACCCACCCCCACAGGCCTCTACTCCT
GCCCTTTACTCATCTCACTGGGGGCCCCCCTTGCTCCCAGTTGGGGGGGGGAGGAGGGGT
TTACAGTGCCTTCTCTGTTGGCCCCCAATCAGAGCTGCAAGGCTGCCAACAGTTGGCCCC
TTTGACTCAGGACAGTCGCTCAATCAACAGGGTGATAGTTCTTCTAAGCCTCTTCCATGG
AGCTGGATGACTTCACAGGGTCAGCCTGGCTCCTTCAAGCCATGGGAGTCTCTGCCTCAG
AGGTCTTCGTATTTATAAACACTCTTGTGCTCACGGCTCTGAAAGGTCAGGAAGGTGCAG
ACTGGCCTTCCTCCCCGACTGGAGTCCCATGTTGCTCATTTCACCTGATTTGCCAAAAAT
TAGTGCTTTGCCAGACATCTTAATGCAGATACTCCTGGGTTATCCACATTTTTGAATCCG
AGATGCTTTATTTCAAATTGGCAGTAATAAATCCAAAATGCATAGTACTTCTTGCAAGGG
GGGTGGGGCATGGAATTAGATCTAATTTTTTTTCCTAATTCCAGAACTCTTATGTAGCCA
ACTAGGAACAGGAAAGCACAAGGAAACAGTACGTATCACCTTTCATGTCCCCCACCTAGG
TAGCCACAAGGTTTGTCCTGGGAAAAGTATGGAGTATGTCCAGTTTGTAGTATCAAAGAT
AGAAACATTAATCAACAGGCCAAAGAATTTCCTGTGCTATTCCAGGTTAATAAAGTAGAG
ATTCTAAATTGCTTTTCTCTGCACAATTCTTCCACTCAGTAGTCAAGACCATCAGAATAC
TTCTCAAATCAACTCTCAAAGGAGGCAGTCAATCTGTAAGACATTTCTCCACTAGAACCA
AGGGACTTAAACCCAGTCTTGTGCTGTAGCACATGTCCTATCCCATGGGACCTGTGCTGC
CACTTCACGCCATTTCTTGCAAAAGTGGTCTCACAACCTTACAAAACAGCTAAGTTCTAG
CTACTGCAGCTTCAGGTCTGGGGCTACAGTTGAAAAGGGAACTCGATTGTTGAATTCTGA
ATACCAAGAGGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|12849146|dbj|BAB28226.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12849146|dbj|BAB28226.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-610, gnl|bosTau2|chr8 (40749315-40749930)
               

               
               1-610, gnl|Hg17|chr3 (12850371-12850983)
               


               
               824-970, gnl|bosTau2|chr8 (40750054-40750205)
               

               
               824-970, gnl|Hg17|chr3 (12851214-12851338)
               


               
               980-1190, gnl|bosTau2|chr8 (40750270-40750477)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-610, gnl|bosTau2|chr8 (40749315-40749930)
               

               
               1-610, gnl|Hg17|chr3 (12850371-12850983)
               


               
               824-970, gnl|bosTau2|chr8 (40750054-40750205)
               

               
               824-970, gnl|Hg17|chr3 (12851214-12851338)
               


               
               980-1190, gnl|bosTau2|chr8 (40750270-40750477)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               sme (0.91631)
               

               
               mas (0.42061)
               

               
               amn (0.417711)
               

               
               vin (0.332557)
               

               
               mga (0.32041)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               ldo (0.0970026)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.91631)
               

               
               mas (0.42061)
               

               
               amn (0.417711)
               

               
               vin (0.332557)
               

               
               mga (0.32041)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               ldo (0.0970026)

	1-610, gnl\|bosTau2\|chr8 (40749315-40749930)
	1-610, gnl\|Hg17\|chr3 (12850371-12850983)

	824-970, gnl\|bosTau2\|chr8 (40750054-40750205)
	824-970, gnl\|Hg17\|chr3 (12851214-12851338)

	980-1190, gnl\|bosTau2\|chr8 (40750270-40750477)

	sme (0.91631)
	mas (0.42061)
	amn (0.417711)
	vin (0.332557)
	mga (0.32041)
	mgp (0.230681)
	nms (0.213858)
	fbs (0.175346)
	eye (0.170503)
	fat (0.147427)
	spl (0.143184)
	lnt (0.142308)
	hlv (0.139256)
	nca (0.136874)
	ssp (0.13552)
	ute (0.132784)
	ldo (0.0970026)