Ss1.1-rute2118b_c6.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAGGCCTCAAGGCTTTGGCAGCTCTGCAACGCGAAGACATGGCCAGGGGCGCTGACAAC ACACTCAGGTGGGCGACTCTGGTGGCGCTGGCTGCCCTGGGCACAGCTGTGACAGCGGCT GCCAACCCCGGCATTGTGGCCAGGATCACACAGAAGGGCCTGGACTACGCCTGCCAGCAG GGAGTGGCTACTCTGCGGAAGGAGCTGGAGAAGATCACGATTCCCACTTTCTCCGGAAGC TTTAAGATCAAGTACTTTGGGAAAGGACGTTATAACTTCTACAGCATGGTTGTTCGTGAA TTCAAGCTTCCCACTTCCCAGATAAGACTGTCACCTGACCAGGGCCTTGATCTCTCCATC AAAGATGCCAGTGTCAAGATCAGTGGAAAATGGAAGGCCCAAAAGAATTTCATCAAAGCC AGTGGCAACTTTGACCTGAGTGTGGAGGGCATCTCCGTTTTGGCTAGTCTGCGGCTGGGT TATGACCCCACCTCTGGCCACTCCACCGTCTCCTGCTCCAGCTGCAGAAGCCACATCAAC AGGGTCCACGTACGCACGTCCGGCAGCAGCCTGAAGTGGCTGATCCAGCTCTTCCACAGA AATATCGAATCTGCGCTCCGAAAAGCCATGGAGAGCAAGATCTGTAAGATGTTGACCAAT ACCGTGTCCTCCAAGCTGCAGCCTTATTTCCAGACCCTGCCAGTGACAGCCAAAGTGGAC AGAATGGTTGGCATCAATTACTCCCTGGTGGCACCTCCAAAAGCCACGGCTGAGAACCTG GATGGGCTGCTGAAGGGGGAGTTTTTCAGCCTGGACCACCCCAGCCCCCCTCCCTTTGCC CCGCCGGCACTGGCCCTTCCTGCCGACCACGACCGCATGGTGTATCTGTGCATCTCCGAA TACTTCTTCAACACGGCCGGGCTGGTGTACCAAAAGGCTGGAGTCCTGAATCTGACCATC AACAACAGCATGATTCCAAAGAAATCTCTGTTCAGCCTGACAACCAACTTCTTTGGAACT CTCATACCCAAGGTGTCCACGATGTTCCCCAACATGGAGATGCAGTTCCTCATCTGGGCC TCCTTCCCCCCGCACCTTGCCGTGCACCCCTCTGGCCTTGACCTCACCTTTGTCCTGGAG ACCCAGGCCTTTGCTGTCCTTCCGAACGCCTCCTTGGCCCCCCTCTTCCGGATTGAGATG AACAGCAGCATTTCTGTGGACATTGGTGTCCGGTCCAAAAGGCTTATTGGAGAGCTCAGG TTGAACAAGCTGCTCCTGGAACTGAAGCACTCAAACATCGGCCCCTTCTCGGTGGAATTG CTGCAGGCTGTCATGAACTTTGCCGTGCCCACTCTTGTGCTTCCCAAGATTAATGAGAAG CTGCAGAGAGGCTTTCCTCTCCCGCTGCCCGCCTACATCCAGCTCTCCAACCTGGTGCTT CAGCCTCATCAGGATTTCCTGCTGTTTGGTGCAGATGTCCGCTATAGCTGAAGTCGCCCT GGGTGGCAGCGGCTGTCAATCCTGTCAGCAGGTGAGGGGGGTCAGGCCTGGTTCCTGACC GGCCCGCGGGGCCCAGGCTGCCCCTCCCCAGGCGTCTCTCTCCAGCTCTTGACCCAGAGA CCCTTGCAAACCTCTCTGAACTCAGATTCCGAAACGATCGAAACAGGGGAACCTTACTCC TTGGAAAAGGGTGCCATGTGTATTTTAGGGATTGTGAATTTCTTTCAGGGGCTCATTTTG ATTGTAATCACAATAATTCTCTTTGCGCTTCACACAACACACCAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAGGCCTCAAGGCTTTGGCAGCTCTGCAACGCGAAGACATGGCCAGGGGCGCTGACAAC ACACTCAGGTGGGCGACTCTGGTGGCGCTGGCTGCCCTGGGCACAGCTGTGACAGCGGCT GCCAACCCCGGCATTGTGGCCAGGATCACACAGAAGGGCCTGGACTACGCCTGCCAGCAG GGAGTGGCTACTCTGCGGAAGGAGCTGGAGAAGATCACGATTCCCACTTTCTCCGGAAGC TTTAAGATCAAGTACTTTGGGAAAGGACGTTATAACTTCTACAGCATGGTTGTTCGTGAA TTCAAGCTTCCCACTTCCCAGATAAGACTGTCACCTGACCAGGGCCTTGATCTCTCCATC AAAGATGCCAGTGTCAAGATCAGTGGAAAATGGAAGGCCCAAAAGAATTTCATCAAAGCC AGTGGCAACTTTGACCTGAGTGTGGAGGGCATCTCCGTTTTGGCTAGTCTGCGGCTGGGT TATGACCCCACCTCTGGCCACTCCACCGTCTCCTGCTCCAGCTGCAGAAGCCACATCAAC AGGGTCCACGTACGCACGTCCGGCAGCAGCCTGAAGTGGCTGATCCAGCTCTTCCACAGA AATATCGAATCTGCGCTCCGAAAAGCCATGGAGAGCAAGATCTGTAAGATGTTGACCAAT ACCGTGTCCTCCAAGCTGCAGCCTTATTTCCAGACCCTGCCAGTGACAGCCAAAGTGGAC AGAATGGTTGGCATCAATTACTCCCTGGTGGCACCTCCAAAAGCCACGGCTGAGAACCTG GATGGGCTGCTGAAGGGGGAGTTTTTCAGCCTGGACCACCCCAGCCCCCCTCCCTTTGCC CCGCCGGCACTGGCCCTTCCTGCCGACCACGACCGCATGGTGTATCTGTGCATCTCCGAA TACTTCTTCAACACGGCCGGGCTGGTGTACCAAAAGGCTGGAGTCCTGAATCTGACCATC AACAACAGCATGATTCCAAAGAAATCTCTGTTCAGCCTGACAACCAACTTCTTTGGAACT CTCATACCCAAGGTGTCCACGATGTTCCCCAACATGGAGATGCAGTTCCTCATCTGGGCC TCCTTCCCCCCGCACCTTGCCGTGCACCCCTCTGGCCTTGACCTCACCTTTGTCCTGGAG ACCCAGGCCTTTGCTGTCCTTCCGAACGCCTCCTTGGCCCCCCTCTTCCGGATTGAGATG AACAGCAGCATTTCTGTGGACATTGGTGTCCGGTCCAAAAGGCTTATTGGAGAGCTCAGG TTGAACAAGCTGCTCCTGGAACTGAAGCACTCAAACATCGGCCCCTTCTCGGTGGAATTG CTGCAGGCTGTCATGAACTTTGCCGTGCCCACTCTTGTGCTTCCCAAGATTAATGAGAAG CTGCAGAGAGGCTTTCCTCTCCCGCTGCCCGCCTACATCCAGCTCTCCAACCTGGTGCTT CAGCCTCATCAGGATTTCCTGCTGTTTGGTGCAGATGTCCGCTATAGCTGAAGTCGCCCT GGGTGGCAGCGGCTGTCAATCCTGTCAGCAGGTGAGGGGGGTCAGGCCTGGTTCCTGACC GGCCCGCGGGGCCCAGGCTGCCCCTCCCCAGGCGTCTCTCTCCAGCTCTTGACCCAGAGA CCCTTGCAAACCTCTCTGAACTCAGATTCCGAAACGATCGAAACAGGGGAACCTTACTCC TTGGAAAAGGGTGCCATGTGTATTTTAGGGATTGTGAATTTCTTTCAGGGGCTCATTTTG ATTGTAATCACAATAATTCTCTTTGCGCTTCACACAACACACCAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
| 169-284, gnl|bosTau2|chr13 (49417876-49417991) | |
| 169-284, gnl|canFam2|chr24 (29747502-29747670) | |
| 169-284, gnl|dasNov1|scaffold_141650 (2532-2737) | |
| 169-284, gnl|echTel1|scaffold_212807 (7865-7662) | |
| 169-284, gnl|hg17|chr20 (36369308-36369510) | |
| 169-284, gnl|Hg17|chr20 (36369382-36369497) | |
| 169-284, gnl|loxAfr1|scaffold_21300 (37881-38084) | |
| 169-284, gnl|mm7|chr2 (158001882-158002084) | |
| 169-284, gnl|Mm7|chr2 (158001956-158002071) | |
| 169-284, gnl|oryCun1|scaffold_212973 (663-463) | |
| 169-284, gnl|panTro1|chr21 (38748221-38748423) | |
| 169-284, gnl|rheMac2|chr10 (26148393-26148191) | |
| 169-284, gnl|rn3|chr3 (148879852-148880058) | |
| 409-573, gnl|bosTau2|chr13 (49420916-49421080) | |
| 409-573, gnl|canFam2|chr24 (29750668-29750881) | |
| 409-573, gnl|dasNov1|scaffold_129666 (645-842) | |
| 409-573, gnl|echTel1|scaffold_312519 (4056-4255) | |
| 409-573, gnl|hg17|chr20 (36372289-36372502) | |
| 409-573, gnl|Hg17|chr20 (36372302-36372466) | |
| 409-573, gnl|loxAfr1|scaffold_30871 (5341-5114) | |
| 409-573, gnl|mm7|chr2 (158003225-158003421) | |
| 409-573, gnl|Mm7|chr2 (158003238-158003399) | |
| 409-573, gnl|oryCun1|scaffold_160805 (12312-12105) | |
| 409-573, gnl|panTro1|chr21 (38751207-38751388) | |
| 409-573, gnl|rheMac2|chr10 (26145410-26145196) | |
| 409-573, gnl|rn3|chr3 (148881224-148881419) | |
| 794-972, gnl|bosTau2|chr13 (49429082-49429260) | |
| 794-972, gnl|canFam2|chr24 (29759605-29759799) | |
| 794-972, gnl|dasNov1|scaffold_13101 (4308-4503) | |
| 794-972, gnl|echTel1|scaffold_44104 (608-415) | |
| 794-972, gnl|hg17|chr20 (36385674-36385868) | |
| 794-972, gnl|Hg17|chr20 (36385684-36385862) | |
| 794-972, gnl|loxAfr1|scaffold_52957 (7908-7715) | |
| 794-972, gnl|mm7|chr2 (158012816-158013009) | |
| 794-972, gnl|Mm7|chr2 (158012825-158013003) | |
| 794-972, gnl|oryCun1|scaffold_160805 (6061-5868) | |
| 794-972, gnl|panTro1|chr21 (38765399-38765594) | |
| 794-972, gnl|rheMac2|chr10 (26131698-26131504) | |
| 794-972, gnl|rn3|chr3 (148890428-148890621) | |
| 794-972, gnl|tetNig1|chr11 (9573835-9573649) | |
| 1031-1200, gnl|bosTau2|chr13 (49432117-49432286) | |
| 1031-1200, gnl|canFam2|chr24 (29762251-29762663) | |
| 1031-1200, gnl|dasNov1|scaffold_13101 (7053-7472) | |
| 1031-1200, gnl|hg17|chr20 (36388009-36388432) | |
| 1031-1200, gnl|Hg17|chr20 (36388079-36388248) | |
| 1031-1200, gnl|loxAfr1|scaffold_52957 (5623-5196) | |
| 1031-1200, gnl|mm7|chr2 (158015493-158015847) | |
| 1031-1200, gnl|Mm7|chr2 (158015563-158015732) | |
| 1031-1200, gnl|oryCun1|scaffold_160805 (3412-3011) | |
| 1031-1200, gnl|panTro1|chr21 (38767690-38768114) | |
| 1031-1200, gnl|rheMac2|chr10 (26129342-26128918) | |
| 1031-1200, gnl|rn3|chr3 (148893340-148893688) | |
| 1450-1733, gnl|bosTau2|chr13 (49443050-49443325) | |
| 1450-1733, gnl|canFam2|chr24 (29771162-29771529) | |
| 1450-1733, gnl|echTel1|scaffold_322855 (1547-1765) | |
| 1450-1733, gnl|hg17|chr20 (36398920-36399257) | |
| 1450-1733, gnl|Hg17|chr20 (36398959-36399219) | |
| 1450-1733, gnl|loxAfr1|scaffold_114116 (525-862) | |
| 1450-1733, gnl|mm7|chr2 (158025084-158025367) | |
| 1450-1733, gnl|oryCun1|scaffold_190323 (92401-92121) | |
| 1450-1733, gnl|panTro1|chr21 (38778887-38779224) | |
| 1450-1733, gnl|rheMac2|chr10 (26118295-26117959) | |
| 1450-1733, gnl|rn3|chr3 (148904335-148904651) |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 169-284, gnl|bosTau2|chr13 (49417876-49417991) | |
| 169-284, gnl|canFam2|chr24 (29747502-29747670) | |
| 169-284, gnl|dasNov1|scaffold_141650 (2532-2737) | |
| 169-284, gnl|echTel1|scaffold_212807 (7865-7662) | |
| 169-284, gnl|hg17|chr20 (36369308-36369510) | |
| 169-284, gnl|Hg17|chr20 (36369382-36369497) | |
| 169-284, gnl|loxAfr1|scaffold_21300 (37881-38084) | |
| 169-284, gnl|mm7|chr2 (158001882-158002084) | |
| 169-284, gnl|Mm7|chr2 (158001956-158002071) | |
| 169-284, gnl|oryCun1|scaffold_212973 (663-463) | |
| 169-284, gnl|panTro1|chr21 (38748221-38748423) | |
| 169-284, gnl|rheMac2|chr10 (26148393-26148191) | |
| 169-284, gnl|rn3|chr3 (148879852-148880058) | |
| 409-573, gnl|bosTau2|chr13 (49420916-49421080) | |
| 409-573, gnl|canFam2|chr24 (29750668-29750881) | |
| 409-573, gnl|dasNov1|scaffold_129666 (645-842) | |
| 409-573, gnl|echTel1|scaffold_312519 (4056-4255) | |
| 409-573, gnl|hg17|chr20 (36372289-36372502) | |
| 409-573, gnl|Hg17|chr20 (36372302-36372466) | |
| 409-573, gnl|loxAfr1|scaffold_30871 (5341-5114) | |
| 409-573, gnl|mm7|chr2 (158003225-158003421) | |
| 409-573, gnl|Mm7|chr2 (158003238-158003399) | |
| 409-573, gnl|oryCun1|scaffold_160805 (12312-12105) | |
| 409-573, gnl|panTro1|chr21 (38751207-38751388) | |
| 409-573, gnl|rheMac2|chr10 (26145410-26145196) | |
| 409-573, gnl|rn3|chr3 (148881224-148881419) | |
| 794-972, gnl|bosTau2|chr13 (49429082-49429260) | |
| 794-972, gnl|canFam2|chr24 (29759605-29759799) | |
| 794-972, gnl|dasNov1|scaffold_13101 (4308-4503) | |
| 794-972, gnl|echTel1|scaffold_44104 (608-415) | |
| 794-972, gnl|hg17|chr20 (36385674-36385868) | |
| 794-972, gnl|Hg17|chr20 (36385684-36385862) | |
| 794-972, gnl|loxAfr1|scaffold_52957 (7908-7715) | |
| 794-972, gnl|mm7|chr2 (158012816-158013009) | |
| 794-972, gnl|Mm7|chr2 (158012825-158013003) | |
| 794-972, gnl|oryCun1|scaffold_160805 (6061-5868) | |
| 794-972, gnl|panTro1|chr21 (38765399-38765594) | |
| 794-972, gnl|rheMac2|chr10 (26131698-26131504) | |
| 794-972, gnl|rn3|chr3 (148890428-148890621) | |
| 794-972, gnl|tetNig1|chr11 (9573835-9573649) | |
| 1031-1200, gnl|bosTau2|chr13 (49432117-49432286) | |
| 1031-1200, gnl|canFam2|chr24 (29762251-29762663) | |
| 1031-1200, gnl|dasNov1|scaffold_13101 (7053-7472) | |
| 1031-1200, gnl|hg17|chr20 (36388009-36388432) | |
| 1031-1200, gnl|Hg17|chr20 (36388079-36388248) | |
| 1031-1200, gnl|loxAfr1|scaffold_52957 (5623-5196) | |
| 1031-1200, gnl|mm7|chr2 (158015493-158015847) | |
| 1031-1200, gnl|Mm7|chr2 (158015563-158015732) | |
| 1031-1200, gnl|oryCun1|scaffold_160805 (3412-3011) | |
| 1031-1200, gnl|panTro1|chr21 (38767690-38768114) | |
| 1031-1200, gnl|rheMac2|chr10 (26129342-26128918) | |
| 1031-1200, gnl|rn3|chr3 (148893340-148893688) | |
| 1450-1733, gnl|bosTau2|chr13 (49443050-49443325) | |
| 1450-1733, gnl|canFam2|chr24 (29771162-29771529) | |
| 1450-1733, gnl|echTel1|scaffold_322855 (1547-1765) | |
| 1450-1733, gnl|hg17|chr20 (36398920-36399257) | |
| 1450-1733, gnl|Hg17|chr20 (36398959-36399219) | |
| 1450-1733, gnl|loxAfr1|scaffold_114116 (525-862) | |
| 1450-1733, gnl|mm7|chr2 (158025084-158025367) | |
| 1450-1733, gnl|oryCun1|scaffold_190323 (92401-92121) | |
| 1450-1733, gnl|panTro1|chr21 (38778887-38779224) | |
| 1450-1733, gnl|rheMac2|chr10 (26118295-26117959) | |
| 1450-1733, gnl|rn3|chr3 (148904335-148904651) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| ute (3.18683) | |
| col (1.75507) | |
| duo (0.518403) | |
| cje (0.495704) | |
| pla (0.267344) | |
| jej (0.0989218) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ute (3.18683) | |
| col (1.75507) | |
| duo (0.518403) | |
| cje (0.495704) | |
| pla (0.267344) | |
| jej (0.0989218) |