Ss1.1-rute2118b_p23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTTCTACGTGATGCGAAAGGAAGAGAACTGAACAAGAAAGAGGAGGACTCAAAGTTGCC CAAACTGACGGTGTCAACGTGGAGATGCACTTAAAGCAGATAGAAATAAAGAAGTTTAAG TACGGCATTGAGGAGCACGGCAAGGTGAAAATGCGAGGGGGCTTGCTGCGAACCTACATC ATCAGTATCCTCTTCAAGTCTGTCTTCGAGGTGGCCTTCTTGCTGATCCAATGGTACATC TATGGATTCAGCCTGAGTGCTGTTTACACTTGCAAAAGAGATCCCTGCCCGCACCAGGTG GACTGTTTCCTCTCTCGTCCCACGGAGAAAACCATCTTCATCATCTTCATGCTGGTCGTA TCCTTGGTGTCTCTCGCCTTGAACATCATCGAACTCTTCTATGTCTTCTTCAAGGGTGTT AAGGATCGTGTGAAGGGAAAGAGTGATCCTTACCACGCCACCACCGGTCCACTGAGCCCC TCCAAAGACTGTGGATCTCCAAAATACGCTTATTTCAATGGCTGCTCCTCACCAACTGCT CCGCTCTCACCCATGTCCCCTCCCGGATACAAGCTGGTTACCGGAGACAGAAACAATTCT TCCTGCCGCAATTACAACAAACAAGCGAGTGAGCAAAACTGGGCTAATTACAGTGCCGAG CAGAATCGAATGGGGCAGGCAGGAAGCACCATCTCTAACTCCCATGCACAGCCTTTTGAT TTCCCCGATGACAACCAGAATTCTAAAAAACTCGATGCTGGCCATGAACTCCAGCCTCTA GCCATTGTGGACCAGCGGCCTTCCAGCAGAGCCAGCAGTCGCGCCAGCAGCCGACCTCGG CCTGATGACCTGGAGATCTAGAGCCAATCTTGAGAACATCAAGATTCCACTCAGTTGTGG AGAAGAAAAAGGTGCTATAGAAAGTGCACCTTAGGTGTTCATTTTTTTTCCAGTGGAGGT GGTACTCAACAGCCTTGTCACAAGGCTTAGAAAACACAAAGACATTAGAATACCTGGTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTTCTACGTGATGCGAAAGGAAGAGAACTGAACAAGAAAGAGGAGGACTCAAAGTTGCC CAAACTGACGGTGTCAACGTGGAGATGCACTTAAAGCAGATAGAAATAAAGAAGTTTAAG TACGGCATTGAGGAGCACGGCAAGGTGAAAATGCGAGGGGGCTTGCTGCGAACCTACATC ATCAGTATCCTCTTCAAGTCTGTCTTCGAGGTGGCCTTCTTGCTGATCCAATGGTACATC TATGGATTCAGCCTGAGTGCTGTTTACACTTGCAAAAGAGATCCCTGCCCGCACCAGGTG GACTGTTTCCTCTCTCGTCCCACGGAGAAAACCATCTTCATCATCTTCATGCTGGTCGTA TCCTTGGTGTCTCTCGCCTTGAACATCATCGAACTCTTCTATGTCTTCTTCAAGGGTGTT AAGGATCGTGTGAAGGGAAAGAGTGATCCTTACCACGCCACCACCGGTCCACTGAGCCCC TCCAAAGACTGTGGATCTCCAAAATACGCTTATTTCAATGGCTGCTCCTCACCAACTGCT CCGCTCTCACCCATGTCCCCTCCCGGATACAAGCTGGTTACCGGAGACAGAAACAATTCT TCCTGCCGCAATTACAACAAACAAGCGAGTGAGCAAAACTGGGCTAATTACAGTGCCGAG CAGAATCGAATGGGGCAGGCAGGAAGCACCATCTCTAACTCCCATGCACAGCCTTTTGAT TTCCCCGATGACAACCAGAATTCTAAAAAACTCGATGCTGGCCATGAACTCCAGCCTCTA GCCATTGTGGACCAGCGGCCTTCCAGCAGAGCCAGCAGTCGCGCCAGCAGCCGACCTCGG CCTGATGACCTGGAGATCTAGAGCCAATCTTGAGAACATCAAGATTCCACTCAGTTGTGG AGAAGAAAAAGGTGCTATAGAAAGTGCACCTTAGGTGTTCATTTTTTTTCCAGTGGAGGT GGTACTCAACAGCCTTGTCACAAGGCTTAGAAAACACAAAGACATTAGAATACCTGGTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 755-874, - strand, RNAz p=0.795024 | |
| 907-1020, + strand, RNAz p=0.949519 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 755-874, - strand, RNAz p=0.795024 | |
| 907-1020, + strand, RNAz p=0.949519 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_000165, + |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-1020, gnl|bosTau2|chr9 (15259922-15260934) | |
| 1-1020, gnl|Hg17|chr6 (121809979-121811000) | |
| 1-1020, gnl|Mm7|chr10 (56205064-56206085) | |
| 130-397, gnl|bosTau2|chr12 (20723158-20722891) | |
| 130-397, gnl|canFam2|chr25 (20987340-20986987) | |
| 130-397, gnl|danRer3|chr17 (35049574-35049884) | |
| 130-397, gnl|dasNov1|scaffold_48450 (3152-2812) | |
| 130-397, gnl|echTel1|scaffold_311996 (40707-40358) | |
| 130-397, gnl|fr1|chrUn (272262841-272262517) | |
| 130-397, gnl|galGal2|chr1 (170949719-170949372) | |
| 130-397, gnl|hg17|chr13 (19614739-19615074) | |
| 130-397, gnl|Hg17|chr13 (19615028-19614761) | |
| 130-397, gnl|loxAfr1|scaffold_13474 (11009-10647) | |
| 130-397, gnl|mm7|chr14 (51903926-51904282) | |
| 130-397, gnl|Mm7|chr14 (51904215-51903948) | |
| 130-397, gnl|monDom2|scaffold_15 (27751843-27752238) | |
| 130-397, gnl|oryCun1|scaffold_205165 (23373-23007) | |
| 130-397, gnl|panTro1|chr14 (18505805-18506140) | |
| 130-397, gnl|rheMac2|chr17 (1367069-1366734) | |
| 130-397, gnl|rn3|chr15 (36068921-36069277) | |
| 130-397, gnl|tetNig1|chr2 (17711441-17711108) | |
| 130-397, gnl|xenTro1|scaffold_327 (892802-893155) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-1020, gnl|bosTau2|chr9 (15259922-15260934) | |
| 1-1020, gnl|Hg17|chr6 (121809979-121811000) | |
| 1-1020, gnl|Mm7|chr10 (56205064-56206085) | |
| 130-397, gnl|bosTau2|chr12 (20723158-20722891) | |
| 130-397, gnl|canFam2|chr25 (20987340-20986987) | |
| 130-397, gnl|danRer3|chr17 (35049574-35049884) | |
| 130-397, gnl|dasNov1|scaffold_48450 (3152-2812) | |
| 130-397, gnl|echTel1|scaffold_311996 (40707-40358) | |
| 130-397, gnl|fr1|chrUn (272262841-272262517) | |
| 130-397, gnl|galGal2|chr1 (170949719-170949372) | |
| 130-397, gnl|hg17|chr13 (19614739-19615074) | |
| 130-397, gnl|Hg17|chr13 (19615028-19614761) | |
| 130-397, gnl|loxAfr1|scaffold_13474 (11009-10647) | |
| 130-397, gnl|mm7|chr14 (51903926-51904282) | |
| 130-397, gnl|Mm7|chr14 (51904215-51903948) | |
| 130-397, gnl|monDom2|scaffold_15 (27751843-27752238) | |
| 130-397, gnl|oryCun1|scaffold_205165 (23373-23007) | |
| 130-397, gnl|panTro1|chr14 (18505805-18506140) | |
| 130-397, gnl|rheMac2|chr17 (1367069-1366734) | |
| 130-397, gnl|rn3|chr15 (36068921-36069277) | |
| 130-397, gnl|tetNig1|chr2 (17711441-17711108) | |
| 130-397, gnl|xenTro1|scaffold_327 (892802-893155) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| nep (0.183925) | |
| ton (0.1755) | |
| che (0.136314) | |
| ute (0.132784) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) | |
| ton (0.1755) | |
| che (0.136314) | |
| ute (0.132784) |