Ss1.1-rute2123b_f9.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTATAGAAATGAGCCCTCAAGGCATCCCCAAGCCCATGGTGATTTTACCCTTCATGAAA TACGGGGACCTGCACACCTACTTGCTCTACTCCCGACTGGACACAGGACCAAAGCATATT CCTCTGCAGACACTGTTGAAGTTCATGGTGGACATTGCCCAGGGAATGGAGTATCTGAGC AACAGGAATTTTCTTCATCGAGATTTAGCTGCTCGGAACTGCATGTTGCGAGATGACATG ACCGTCTGCGTGGCGGACTTTGGCCTCTCTAAGAAGATTTACAGCGGCGATTACTACCGC CAAGGTCGCATCGCTAAGATGCCTGTGAAATGGATCGCCATAGAGAGTCTCGCAGACCGA GTCTACACCAGTAAAAGTGACGTGTGGGCATTTGGCGTGACCATGTGGGAAATAGCCACA CGAGGAATGACCCCCTATCCCGGAGTCCAGAACCACGAAATGTATGACTATCTTCTCCAC GGCCACAGGCTGAAACAGCCCGAGGACTGTCTGGATGAACTGTGAGTCATAATGCACTCG TGCTGGAGAGCTGAGCCCTTGGACCGCCCCACCTTTTCAGTGCTGAGGCTGCAGCTAGAA AAGCTCCTGGAAAGTCTCCCTGAAGTTCGGGACAAAGCGGACGTCATTTACATCAACACA CAGTTTCCGGAGAGCTGCGAGGGCTTGGCCGAGGGCTCGGCCCTGGTCCAGCTGGACTTG AACATTGATCCGAACTCTGTAATCGCTTCTTGTGCTTCCGGCGCTGCGGTCAGCGTAGTC ACGGCGGAAGTGCACGAGAACAGAGCTGAGGAGGGAAGGTACATCCTCAACGGGGGCAGC GAAGGATGGGAAGATCAGGCTTCTGCCAGCCTGGCCCCGGGGCCAGCGGGAAAGAACGGT ACTTTCCCGGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTATAGAAATGAGCCCTCAAGGCATCCCCAAGCCCATGGTGATTTTACCCTTCATGAAA TACGGGGACCTGCACACCTACTTGCTCTACTCCCGACTGGACACAGGACCAAAGCATATT CCTCTGCAGACACTGTTGAAGTTCATGGTGGACATTGCCCAGGGAATGGAGTATCTGAGC AACAGGAATTTTCTTCATCGAGATTTAGCTGCTCGGAACTGCATGTTGCGAGATGACATG ACCGTCTGCGTGGCGGACTTTGGCCTCTCTAAGAAGATTTACAGCGGCGATTACTACCGC CAAGGTCGCATCGCTAAGATGCCTGTGAAATGGATCGCCATAGAGAGTCTCGCAGACCGA GTCTACACCAGTAAAAGTGACGTGTGGGCATTTGGCGTGACCATGTGGGAAATAGCCACA CGAGGAATGACCCCCTATCCCGGAGTCCAGAACCACGAAATGTATGACTATCTTCTCCAC GGCCACAGGCTGAAACAGCCCGAGGACTGTCTGGATGAACTGTGAGTCATAATGCACTCG TGCTGGAGAGCTGAGCCCTTGGACCGCCCCACCTTTTCAGTGCTGAGGCTGCAGCTAGAA AAGCTCCTGGAAAGTCTCCCTGAAGTTCGGGACAAAGCGGACGTCATTTACATCAACACA CAGTTTCCGGAGAGCTGCGAGGGCTTGGCCGAGGGCTCGGCCCTGGTCCAGCTGGACTTG AACATTGATCCGAACTCTGTAATCGCTTCTTGTGCTTCCGGCGCTGCGGTCAGCGTAGTC ACGGCGGAAGTGCACGAGAACAGAGCTGAGGAGGGAAGGTACATCCTCAACGGGGGCAGC GAAGGATGGGAAGATCAGGCTTCTGCCAGCCTGGCCCCGGGGCCAGCGGGAAAGAACGGT ACTTTCCCGGAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 728-847, + strand, RNAz p=0.713059 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 728-847, + strand, RNAz p=0.713059 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 121-226, gnl|bosTau2|chr10 (23061210-23061315) | |
| 121-226, gnl|Hg17|chr15 (39652498-39652603) | |
| 121-226, gnl|Mm7|chr2 (119553400-119553505) | |
| 384-526, gnl|bosTau2|chr18 (45748275-45748417) | |
| 384-526, gnl|canFam2|chr1 (115610926-115610773) | |
| 384-526, gnl|danRer3|chr5 (39150458-39150311) | |
| 384-526, gnl|dasNov1|scaffold_22567 (41824-41671) | |
| 384-526, gnl|echTel1|scaffold_67639 (2473-2338) | |
| 384-526, gnl|fr1|chrUn (97582676-97582529) | |
| 384-526, gnl|galGal2|chr3 (3120270-3120419) | |
| 384-526, gnl|hg17|chr19 (46455233-46455386) | |
| 384-526, gnl|Hg17|chr19 (46455237-46455379) | |
| 384-526, gnl|loxAfr1|scaffold_162048 (4122-3974) | |
| 384-526, gnl|mm7|chr7 (22534926-22534773) | |
| 384-526, gnl|Mm7|chr7 (22534920-22534778) | |
| 384-526, gnl|monDom2|scaffold_149 (817833-817986) | |
| 384-526, gnl|oryCun1|scaffold_214968 (70276-70129) | |
| 384-526, gnl|panTro1|chr20 (43439387-43439540) | |
| 384-526, gnl|rheMac2|chr19 (47647649-47647802) | |
| 384-526, gnl|rn3|chr1 (81045015-81044862) | |
| 384-526, gnl|tetNig1|chr16 (6220318-6220165) | |
| 384-526, gnl|xenTro1|scaffold_679 (198828-198976) | |
| 529-912, gnl|bosTau2|chr11 (1989533-1989916) | |
| 529-912, gnl|Hg17|chr2 (112502166-112502549) | |
| 529-912, gnl|Mm7|chr2 (128542014-128542397) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 121-226, gnl|bosTau2|chr10 (23061210-23061315) | |
| 121-226, gnl|Hg17|chr15 (39652498-39652603) | |
| 121-226, gnl|Mm7|chr2 (119553400-119553505) | |
| 384-526, gnl|bosTau2|chr18 (45748275-45748417) | |
| 384-526, gnl|canFam2|chr1 (115610926-115610773) | |
| 384-526, gnl|danRer3|chr5 (39150458-39150311) | |
| 384-526, gnl|dasNov1|scaffold_22567 (41824-41671) | |
| 384-526, gnl|echTel1|scaffold_67639 (2473-2338) | |
| 384-526, gnl|fr1|chrUn (97582676-97582529) | |
| 384-526, gnl|galGal2|chr3 (3120270-3120419) | |
| 384-526, gnl|hg17|chr19 (46455233-46455386) | |
| 384-526, gnl|Hg17|chr19 (46455237-46455379) | |
| 384-526, gnl|loxAfr1|scaffold_162048 (4122-3974) | |
| 384-526, gnl|mm7|chr7 (22534926-22534773) | |
| 384-526, gnl|Mm7|chr7 (22534920-22534778) | |
| 384-526, gnl|monDom2|scaffold_149 (817833-817986) | |
| 384-526, gnl|oryCun1|scaffold_214968 (70276-70129) | |
| 384-526, gnl|panTro1|chr20 (43439387-43439540) | |
| 384-526, gnl|rheMac2|chr19 (47647649-47647802) | |
| 384-526, gnl|rn3|chr1 (81045015-81044862) | |
| 384-526, gnl|tetNig1|chr16 (6220318-6220165) | |
| 384-526, gnl|xenTro1|scaffold_679 (198828-198976) | |
| 529-912, gnl|bosTau2|chr11 (1989533-1989916) | |
| 529-912, gnl|Hg17|chr2 (112502166-112502549) | |
| 529-912, gnl|Mm7|chr2 (128542014-128542397) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ute (0.132784) |