Ss1.1-rute2125b_c20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGCCGAGACTGACGCGTTGGCTGCGGAGAGGCTGTGGGATCTTGGCACACCTGGTCGC TTTGGGCTTCACCATCTTTCTGACTGTGCTGTCCCGGCCGGGAACCAGTTTTTTCTCCTG GCACCCTGTATTCATGGCCTTGGCGTTCTGCCTCTGCATGGCTGAGGCCATCCTACTCTT CTCGCCTGAGCACTCCCCGTTCTTCTTCTGCTCCCGAAAGGTCCGGATCCGACTCCATTG GGCAGGGCAGACCCTAGCCATCCTCTGTGCAGCCCTGGGCCTGGGCTTCATCGTCTCCAG CAGGACCCGCAGTGAGCTGCCCCACCTGGTGTCCTGGCACAGCTGGGTAGGGGCTCTGAC ATTACTGGCCACTGGTGGCCAGGCACTGTGTGGGCTCTGCCTCCTCTGTCCCCGGGCAGC CAGGGTCTCAAGGGTGGCTCGCCTCAAGCTCTACCATCTGACTTGTGGACTGGTGGTCTA CCTGATGGCTACGGTAACGGTACTCCTGGGCCTGCACTCTGTGTGGTTCCAGGCCCAGAT CAAAGATGCAGCCTGGTACCTGTGCCTGGCGCTGCCCCTCTATCCAGCCCTGGTAATCAT GCATCAGATCTCCAGCTCCTACTTGCCAAGGAAGAAAATGGAAATGTGAGTTCCTCTGAA CTCTGAATCTAAATGGGACACTTAACTCGGACTTCAGTGGCTCCTTGGGTGACCTTCAAG GATCCAGTTCAGAAGTTGTAGGGTTTTTGTACTTCATAGCTGGGCCAGGGGCTGCCGAAA CCCCAACTGCTGTGGCTGACAGATGACTCAGTGGGCAACATCGGGGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGCCGAGACTGACGCGTTGGCTGCGGAGAGGCTGTGGGATCTTGGCACACCTGGTCGC TTTGGGCTTCACCATCTTTCTGACTGTGCTGTCCCGGCCGGGAACCAGTTTTTTCTCCTG GCACCCTGTATTCATGGCCTTGGCGTTCTGCCTCTGCATGGCTGAGGCCATCCTACTCTT CTCGCCTGAGCACTCCCCGTTCTTCTTCTGCTCCCGAAAGGTCCGGATCCGACTCCATTG GGCAGGGCAGACCCTAGCCATCCTCTGTGCAGCCCTGGGCCTGGGCTTCATCGTCTCCAG CAGGACCCGCAGTGAGCTGCCCCACCTGGTGTCCTGGCACAGCTGGGTAGGGGCTCTGAC ATTACTGGCCACTGGTGGCCAGGCACTGTGTGGGCTCTGCCTCCTCTGTCCCCGGGCAGC CAGGGTCTCAAGGGTGGCTCGCCTCAAGCTCTACCATCTGACTTGTGGACTGGTGGTCTA CCTGATGGCTACGGTAACGGTACTCCTGGGCCTGCACTCTGTGTGGTTCCAGGCCCAGAT CAAAGATGCAGCCTGGTACCTGTGCCTGGCGCTGCCCCTCTATCCAGCCCTGGTAATCAT GCATCAGATCTCCAGCTCCTACTTGCCAAGGAAGAAAATGGAAATGTGAGTTCCTCTGAA CTCTGAATCTAAATGGGACACTTAACTCGGACTTCAGTGGCTCCTTGGGTGACCTTCAAG GATCCAGTTCAGAAGTTGTAGGGTTTTTGTACTTCATAGCTGGGCCAGGGGCTGCCGAAA CCCCAACTGCTGTGGCTGACAGATGACTCAGTGGGCAACATCGGGGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 304-459, - strand, RNAz p=0.99836 | |
| 500-619, - strand, RNAz p=0.999896 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 304-459, - strand, RNAz p=0.99836 | |
| 500-619, - strand, RNAz p=0.999896 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 1-109, gnl|bosTau2|chr3 (25967659-25967551) | |
| 1-109, gnl|Hg17|chr1 (109748845-109748953) | |
| 1-109, gnl|Mm7|chr3 (108019021-108018913) | |
| 145-656, gnl|bosTau2|chr22 (38627869-38628380) | |
| 145-656, gnl|canFam2|chr20 (42003793-42003407) | |
| 145-656, gnl|danRer3|chr6 (30750685-30750297) | |
| 145-656, gnl|dasNov1|scaffold_61047 (7891-7514) | |
| 145-656, gnl|echTel1|scaffold_274637 (13958-14336) | |
| 145-656, gnl|fr1|chrUn (126554261-126553866) | |
| 145-656, gnl|hg17|chr3 (50365640-50366028) | |
| 145-656, gnl|Hg17|chr3 (50365675-50366186) | |
| 145-656, gnl|loxAfr1|scaffold_33789 (9871-9484) | |
| 145-656, gnl|mm7|chr9 (107269859-107269483) | |
| 145-656, gnl|Mm7|chr9 (107269834-107269323) | |
| 145-656, gnl|monDom2|scaffold_5 (73912276-73911913) | |
| 145-656, gnl|oryCun1|scaffold_208515 (36984-36600) | |
| 145-656, gnl|panTro1|chr2 (51944816-51945204) | |
| 145-656, gnl|rheMac2|chr2 (86061377-86060989) | |
| 145-656, gnl|rn3|chr8 (112807309-112806931) | |
| 145-656, gnl|tetNig1|chr11 (5395468-5395855) | |
| 145-656, gnl|xenTro1|scaffold_189 (1557467-1557113) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-109, gnl|bosTau2|chr3 (25967659-25967551) | |
| 1-109, gnl|Hg17|chr1 (109748845-109748953) | |
| 1-109, gnl|Mm7|chr3 (108019021-108018913) | |
| 145-656, gnl|bosTau2|chr22 (38627869-38628380) | |
| 145-656, gnl|canFam2|chr20 (42003793-42003407) | |
| 145-656, gnl|danRer3|chr6 (30750685-30750297) | |
| 145-656, gnl|dasNov1|scaffold_61047 (7891-7514) | |
| 145-656, gnl|echTel1|scaffold_274637 (13958-14336) | |
| 145-656, gnl|fr1|chrUn (126554261-126553866) | |
| 145-656, gnl|hg17|chr3 (50365640-50366028) | |
| 145-656, gnl|Hg17|chr3 (50365675-50366186) | |
| 145-656, gnl|loxAfr1|scaffold_33789 (9871-9484) | |
| 145-656, gnl|mm7|chr9 (107269859-107269483) | |
| 145-656, gnl|Mm7|chr9 (107269834-107269323) | |
| 145-656, gnl|monDom2|scaffold_5 (73912276-73911913) | |
| 145-656, gnl|oryCun1|scaffold_208515 (36984-36600) | |
| 145-656, gnl|panTro1|chr2 (51944816-51945204) | |
| 145-656, gnl|rheMac2|chr2 (86061377-86060989) | |
| 145-656, gnl|rn3|chr8 (112807309-112806931) | |
| 145-656, gnl|tetNig1|chr11 (5395468-5395855) | |
| 145-656, gnl|xenTro1|scaffold_189 (1557467-1557113) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pgl (0.236967) | |
| ute (0.132784) |