Non-Coding RNA Search

Ss1.1-rute2125b_p17.5

Sequence:


               
               TTGACCTGTCAGCAGTAGGCCAGCTCACCACAGACCAACGCCGAAATCTTGGCTCCATTG
CAAAGATGCTGCAGCACGCAGCTTCCAATAAGATGTTTCTGGGAGATAATGCTCACTTAA
GCATCATTAATGAATATCTTTCCCAGTCCTACCAGAAATTCAGACGGTTTTTCCAAACTG
CTTGTGATGTCCCAGAGCTTCAGGATAAATTTAATGTGGATGAGTATTCTGATTTAGTGA
CCCTCACCAAGCCTGTGATCTACATTTCCATTGGCGAAATCATCAACACCCACACTCTCC
TGTTAGATCACCAGGACGCCATTGCCCCAGAGCACAATGATCCGATCCATGAGCTGCTGG
ATGATCTTGGCGAGGTGCCCACCATCGAGTCCCTGATAGGAGAAGGCTCTGGCAACGTAA
ATGACCCAAATAAGGAGGCACTGGCTAAGACAGAAGTCTCTCTCACACTGACCAACAAGT
TTGACGTGCCTGGGGATGAGAATGCAGAAATGGACGCTCGGACCATCTTGCTGAACACAA
AACGTTTAATTGTGGATGTCATCCGGTTCCAGCCAGGAGAGACCTTGACTGAAATCCTAG
AAACACCAGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGACCTGTCAGCAGTAGGCCAGCTCACCACAGACCAACGCCGAAATCTTGGCTCCATTG
CAAAGATGCTGCAGCACGCAGCTTCCAATAAGATGTTTCTGGGAGATAATGCTCACTTAA
GCATCATTAATGAATATCTTTCCCAGTCCTACCAGAAATTCAGACGGTTTTTCCAAACTG
CTTGTGATGTCCCAGAGCTTCAGGATAAATTTAATGTGGATGAGTATTCTGATTTAGTGA
CCCTCACCAAGCCTGTGATCTACATTTCCATTGGCGAAATCATCAACACCCACACTCTCC
TGTTAGATCACCAGGACGCCATTGCCCCAGAGCACAATGATCCGATCCATGAGCTGCTGG
ATGATCTTGGCGAGGTGCCCACCATCGAGTCCCTGATAGGAGAAGGCTCTGGCAACGTAA
ATGACCCAAATAAGGAGGCACTGGCTAAGACAGAAGTCTCTCTCACACTGACCAACAAGT
TTGACGTGCCTGGGGATGAGAATGCAGAAATGGACGCTCGGACCATCTTGCTGAACACAA
AACGTTTAATTGTGGATGTCATCCGGTTCCAGCCAGGAGAGACCTTGACTGAAATCCTAG
AAACACCAGCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-163, - strand, RNAz p=0.92824

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-163, - strand, RNAz p=0.92824

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-163, gnl|bosTau2|chr21 (12517799-12517637)
               

               
               1-163, gnl|canFam2|chr3 (56559774-56559521)
               

               
               1-163, gnl|danRer3|chr5 (53193437-53193186)
               

               
               1-163, gnl|dasNov1|scaffold_6795 (11293-11043)
               

               
               1-163, gnl|echTel1|scaffold_294341 (66724-66977)
               

               
               1-163, gnl|fr1|chrUn (24078034-24078284)
               

               
               1-163, gnl|galGal2|chr10 (20883882-20884139)
               

               
               1-163, gnl|hg17|chr15 (88827582-88827834)
               

               
               1-163, gnl|Hg17|chr15 (88827667-88827829)
               

               
               1-163, gnl|loxAfr1|scaffold_14597 (30338-30087)
               

               
               1-163, gnl|mm7|chr7 (76600532-76600289)
               

               
               1-163, gnl|Mm7|chr7 (76600454-76600292)
               

               
               1-163, gnl|monDom2|scaffold_41 (11042865-11043103)
               

               
               1-163, gnl|oryCun1|scaffold_179173 (58857-58604)
               

               
               1-163, gnl|panTro1|chr16 (89768388-89768640)
               

               
               1-163, gnl|rheMac2|chr7 (70193254-70193506)
               

               
               1-163, gnl|rn3|chr1 (136647773-136647530)
               

               
               1-163, gnl|tetNig1|chrUn_random (6791707-6791958)
               

               
               1-163, gnl|xenTro1|scaffold_828 (491624-491374)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-163, gnl|bosTau2|chr21 (12517799-12517637)
               

               
               1-163, gnl|canFam2|chr3 (56559774-56559521)
               

               
               1-163, gnl|danRer3|chr5 (53193437-53193186)
               

               
               1-163, gnl|dasNov1|scaffold_6795 (11293-11043)
               

               
               1-163, gnl|echTel1|scaffold_294341 (66724-66977)
               

               
               1-163, gnl|fr1|chrUn (24078034-24078284)
               

               
               1-163, gnl|galGal2|chr10 (20883882-20884139)
               

               
               1-163, gnl|hg17|chr15 (88827582-88827834)
               

               
               1-163, gnl|Hg17|chr15 (88827667-88827829)
               

               
               1-163, gnl|loxAfr1|scaffold_14597 (30338-30087)
               

               
               1-163, gnl|mm7|chr7 (76600532-76600289)
               

               
               1-163, gnl|Mm7|chr7 (76600454-76600292)
               

               
               1-163, gnl|monDom2|scaffold_41 (11042865-11043103)
               

               
               1-163, gnl|oryCun1|scaffold_179173 (58857-58604)
               

               
               1-163, gnl|panTro1|chr16 (89768388-89768640)
               

               
               1-163, gnl|rheMac2|chr7 (70193254-70193506)
               

               
               1-163, gnl|rn3|chr1 (136647773-136647530)
               

               
               1-163, gnl|tetNig1|chrUn_random (6791707-6791958)
               

               
               1-163, gnl|xenTro1|scaffold_828 (491624-491374)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ute (0.132784)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.132784)

	1-163, gnl\|bosTau2\|chr21 (12517799-12517637)
	1-163, gnl\|canFam2\|chr3 (56559774-56559521)
	1-163, gnl\|danRer3\|chr5 (53193437-53193186)
	1-163, gnl\|dasNov1\|scaffold_6795 (11293-11043)
	1-163, gnl\|echTel1\|scaffold_294341 (66724-66977)
	1-163, gnl\|fr1\|chrUn (24078034-24078284)
	1-163, gnl\|galGal2\|chr10 (20883882-20884139)
	1-163, gnl\|hg17\|chr15 (88827582-88827834)
	1-163, gnl\|Hg17\|chr15 (88827667-88827829)
	1-163, gnl\|loxAfr1\|scaffold_14597 (30338-30087)
	1-163, gnl\|mm7\|chr7 (76600532-76600289)
	1-163, gnl\|Mm7\|chr7 (76600454-76600292)
	1-163, gnl\|monDom2\|scaffold_41 (11042865-11043103)
	1-163, gnl\|oryCun1\|scaffold_179173 (58857-58604)
	1-163, gnl\|panTro1\|chr16 (89768388-89768640)
	1-163, gnl\|rheMac2\|chr7 (70193254-70193506)
	1-163, gnl\|rn3\|chr1 (136647773-136647530)
	1-163, gnl\|tetNig1\|chrUn_random (6791707-6791958)
	1-163, gnl\|xenTro1\|scaffold_828 (491624-491374)