Non-Coding RNA Search

Ss1.1-rute2129b_a2.5.5

Sequence:


               
               AAGTCTCATTATTTCTGGAAAGCCGTCAGCTAGTTCTGAAAAGCCGTCAGCTAGTTCTGA
CCTCTAGCACACACACACTCACGGCAGCGAGTTTTCCATGTGGTAGATTCTGTGCAGTGA
TGATATTCAGCCTCAAACTTAAGAGTTGTGTATGTGCGTGGGGTGAACACACCCATGTCT
GCGTATGCAGTTTAGTTGGTCTTACTTATCTGCTTAAGAATTGCACCTGTGTGCCTTCGT
TGAAATTAGATTTTTTTCCAACTGATTTTTTTCTCAGTGGCTAATACCGTTAATGAATTG
ATGGAGATTGCTGATGAAAGTAGATGAGCCACTCTTCAGCAACACTGTTTTCCCTTAATG
TGGATTTGAGGAACTCATCTTGCCAGACATCCTGATATGTGCCACTCATTGCCTTTAGGT
CATTGATCCAATTTACTCCTGTGGTTCAAATGAAGCTACCGTGGTGTTCTGTAAATATTT
TACAACCACAGCCATCAAACCAGAAAGGATATCAGGACAGCTTCAAACCAAAGATCATGT
TTAAAACAATGAGAAATTATTGTGTCTTAAACACTCCTCTATCATGAAAGTTCTTCATTT
AGCAACTGTCGTAATTTTGAACTTCTGGGAAACAACTGAGAATGAAAAGATTTTTTCAAA
TTACAAAATAGTGTTTATGGTCATTCAGTATTTATGGCTTATTCGTATTGGGGACATATG
AATGTGATGAATATAGTGAATATTGAAGAAAAAATTTAACACTTTCCGAATGATGGTATA
ACATTTAGAAATTTTTAGTCTTTACTAATAGTACTCTTTTTTTCAGGATGAAAGTAGCAC
TTTACCAAAAGATTAACCGGGAGAGGGTTATTTTATCAGTTATGTTTGATTTCTTTTGAA
TTATATGTATTTGCCAGTATAAGTGGGCTATTCTGGCTGATTGTATTAAGCAGGTCTTCA
TTACTTTGAAATTAAAGTGGAAAATATTTGTATTTTCACATGTACGTTTTAGACATTTTT
GTTAGTTTTATGAAAAAGACATTCTTTGATGTATTCGGTTGATAAATATTAATCTGATTT
TTTTCATGTTCTTTGCTATTTTAAGTTCCATTATAGAGTCATGAATAAAGTCATTAGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGTCTCATTATTTCTGGAAAGCCGTCAGCTAGTTCTGAAAAGCCGTCAGCTAGTTCTGA
CCTCTAGCACACACACACTCACGGCAGCGAGTTTTCCATGTGGTAGATTCTGTGCAGTGA
TGATATTCAGCCTCAAACTTAAGAGTTGTGTATGTGCGTGGGGTGAACACACCCATGTCT
GCGTATGCAGTTTAGTTGGTCTTACTTATCTGCTTAAGAATTGCACCTGTGTGCCTTCGT
TGAAATTAGATTTTTTTCCAACTGATTTTTTTCTCAGTGGCTAATACCGTTAATGAATTG
ATGGAGATTGCTGATGAAAGTAGATGAGCCACTCTTCAGCAACACTGTTTTCCCTTAATG
TGGATTTGAGGAACTCATCTTGCCAGACATCCTGATATGTGCCACTCATTGCCTTTAGGT
CATTGATCCAATTTACTCCTGTGGTTCAAATGAAGCTACCGTGGTGTTCTGTAAATATTT
TACAACCACAGCCATCAAACCAGAAAGGATATCAGGACAGCTTCAAACCAAAGATCATGT
TTAAAACAATGAGAAATTATTGTGTCTTAAACACTCCTCTATCATGAAAGTTCTTCATTT
AGCAACTGTCGTAATTTTGAACTTCTGGGAAACAACTGAGAATGAAAAGATTTTTTCAAA
TTACAAAATAGTGTTTATGGTCATTCAGTATTTATGGCTTATTCGTATTGGGGACATATG
AATGTGATGAATATAGTGAATATTGAAGAAAAAATTTAACACTTTCCGAATGATGGTATA
ACATTTAGAAATTTTTAGTCTTTACTAATAGTACTCTTTTTTTCAGGATGAAAGTAGCAC
TTTACCAAAAGATTAACCGGGAGAGGGTTATTTTATCAGTTATGTTTGATTTCTTTTGAA
TTATATGTATTTGCCAGTATAAGTGGGCTATTCTGGCTGATTGTATTAAGCAGGTCTTCA
TTACTTTGAAATTAAAGTGGAAAATATTTGTATTTTCACATGTACGTTTTAGACATTTTT
GTTAGTTTTATGAAAAAGACATTCTTTGATGTATTCGGTTGATAAATATTAATCTGATTT
TTTTCATGTTCTTTGCTATTTTAAGTTCCATTATAGAGTCATGAATAAAGTCATTAGCAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               173-272, - strand, RNAz p=0.82426

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               173-272, - strand, RNAz p=0.82426

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               19-1140, gnl|bosTau2|chr18 (32920945-32919845)
               

               
               19-1140, gnl|Hg17|chr16 (69874891-69873709)
               

               
               19-1140, gnl|Mm7|chr8 (108823298-108824302)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-1140, gnl|bosTau2|chr18 (32920945-32919845)
               

               
               19-1140, gnl|Hg17|chr16 (69874891-69873709)
               

               
               19-1140, gnl|Mm7|chr8 (108823298-108824302)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               mgm (0.180343)
               

               
               duo (0.172801)
               

               
               lin (0.145603)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               ldo (0.0970026)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgm (0.180343)
               

               
               duo (0.172801)
               

               
               lin (0.145603)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               ldo (0.0970026)

	19-1140, gnl\|bosTau2\|chr18 (32920945-32919845)
	19-1140, gnl\|Hg17\|chr16 (69874891-69873709)
	19-1140, gnl\|Mm7\|chr8 (108823298-108824302)

	mgm (0.180343)
	duo (0.172801)
	lin (0.145603)
	ute (0.132784)
	ret (0.128733)
	tra (0.123092)
	eep (0.122564)
	ldo (0.0970026)